Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 30.8 |
Annotation | |
Source Name | emf21K08 |
Source Type | genomic |
Source Sequence | CTGATGCTTTGTGTTCTCTGACTTAAGGCTTCCTTATGAC TCTCTGAATAAGAGGTGAGTGATAATATATAATCCCTCTT TTGGATCAAATGTTGTAAATTACCTGAGCCACCGGTCTGT CGGAAATATCTCTCTAGTTCCCTAACTCCACTTGTGAAAT TACGTTGGTTTGTTGAAAAATAAATTCTATAGTTGCTGTA TTCAACGGAAATGTCTTTGATCAACTGTAGGTGGGATTTG ATTATTTCAAATCCATTTGAATTGTAATTTGAACTTCTAT TGTATCTGGAGTACGAACACAAATCCCCCAACTCCATTTT CACTTCGGCAGAAGAACGAGGTGTTTGTTCCAGGAATCAC CAGCCATGGTATGAAAAATCTCTTTCCTTGTCAATGACAC CCAAAACCCATTTTCTCGCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTTTCGTTTTTCGAGTTT GATCTAGTGCATAATTGTTACGATTGATGCTTGAAATTAA GATACATTTGTAAAAAAAATACACATGGGTCTTTTGTATA TTTTGATTTGTTGCATTTGTTCTATACAATTTCGGATTTG TATTGGGTTTTCACCAAATTGATTGTTTTTAGGTCATATG AGGAGTACGGTTCTATGAATAATATATCCAGTTTCTCTTA AGGGGTGTCAAAGATTTGGCTGATAGTAGACGAGGGGTTG GATTAGATTAAGGAATTCTTGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)22 |
---|---|
PCR product (bp) | 226 |
fwd primer | emf21K08/U |
fwd primer seq. | gtcaatgacacccaaaacccattt |
rev primer | emf21K08/L |
rev primer seq. | ggtgaaaacccaatacaaatccga |
fluor. primer | emf21K08/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-atcaatgacacccaaaacccattt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 228 | 228 |
EPL-1 | 230 | 230 |
LS1151 (S.linneanum) | 230 | 230 |
LS1934 | 226 | 226 |
LS4021 (S. incanum) | 226 | 226 |
Nakate Shinkuro | 215 | 215 |
Senryo 2 | 219 | 230 |
Shironasu | 226 | 226 |
WCGR112-8 | 215 | 215 |
White Egg | 226 | 226 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 30.8 |
ALF2 | AL11 | 39.1 |
EW2009 | LG01 | 88.1 |
LW2010 | E_11 | 30.7 |
LWA2010 | LWA_11 | 30.957 |
LWAE2012 | E_11 | 35.224 |
LWF2_2022 | E_11 | 35.7 |
NAF2 | NA11 | 29.7 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|