Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 35.0 |
Annotation | |
Source Name | emf21H22 |
Source Type | genomic |
Source Sequence | CTTGGATGATGAAAGAAGTGATTGAAATAAAATACAACTT TGCATAACAGTGAATAAATACACAAGATGAACAAGACTAA GGAGTGCATTCAAGAGAGAGAGAGAGAGAGAGAGAGAAAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGA ACTGGGCTAAAGACAGGTTGAAGAAGTTGAATGTGGATCT AAGCACTTCTACGCTTTTTGTCTAATAGTTATAGTTTTTA ATTCTAGAAAT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)12aa(ag)18 |
---|---|
PCR product (bp) | 126 |
fwd primer | emf21H22/U |
fwd primer seq. | cacaagatgaacaagactaaggagtgc |
rev primer | emf21H22/L |
rev primer seq. | cttcttcaacctgtctttagccca |
fluor. primer | emf21H22/U_PET |
dye | PET |
fluor. Primer seq. | PET-atcaagatgaacaagactaaggagtgc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 135 | 135 |
EPL-1 | 125 | 125 |
LS1151 (S.linneanum) | 127 | 127 |
LS1934 | 143 | 143 |
LS4021 (S. incanum) | 90 | 90 |
Nakate Shinkuro | 132 | 132 |
Senryo 2 | 129 | 131 |
Shironasu | 137 | 137 |
WCGR112-8 | 137 | 137 |
White Egg | 133 | 133 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 35.0 |
ALF2 | AL08 | 40.7 |
EW2009 | LG07 | 39.9 |
LW2010 | E_08 | 42.0 |
LWA2010 | LWA_08 | 36.809 |
LWAE2012 | E_08 | 37.963 |
LWF2_2022 | E_08 | 43.8 |
N28F2 | E_08 | 56.2 |
NAF2 | NA08 | 58.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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