Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 73.4 |
Annotation | |
Source Name | emf21H18 |
Source Type | genomic |
Source Sequence | CTGTCATGGTTTCCCATGGACTAAGTAGAATTCTTTGTCC TATCTACCACATCCCAAAGAAAGTTCCCTTGCAACCTTTC CACCTTTCCTATAACAACGGAAAGTGCATTGAAAAAGGAC AGACAATATATAGGAATACTAGATAAAGTGATCTTAATAA GCACTTCCTTCCCTGCTTTGGAAAAATATCTCTTTTGCGA CCTTGCTAGCCTCTTCTTTACTCTCTGAATGACCGGATTC CAAATTTCGGATTCAAGTCTTTAAATCTTCAAGATATAAA AGTTGCACTCTTTGATCGAGGAATAGGATCTTCATTTATT TGTCTCCCTCTTCTTTTGTGACCTGTCGTTCTTGTCAAAA TCGTGAAATACAAACTTGACTTGGAATTTTGTGAAATCTT CTTCAAAGTGGTTTGTACTCCTCTTCCCCCCATGTCATTG GTTTCTGTTGAACTCTTTAGTTTGGACCATTTTGGTGAAA CCAATGTCCAAAGATTGATTATCTTTGTTGTTGGCAATTT TATCCAAGTCTCTCTCTCTCTCTCTCTCTGATGGATGAAA AAGACCTTTGCTTTACTTTGATATTTTTTTATTGTAACAT GACTTGCACCAGATTTCGTGAAATGTTGCTGAGAATGTCA TTGTAGCATTTTATCAAGGTGCTCTATTATTATCTGTTTC GATGCTCCTACATTAGATTCATTTGTACTCATTGAACATG CATTTCTTCCTTTATTTTTCTGATTATGATGTGCTGTTTG AGAACC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ttg)3gcaattttatccaag(tc)10 |
---|---|
PCR product (bp) | 297 |
fwd primer | emf21H18/U |
fwd primer seq. | ccctcttcttttgtgacctgtcgt |
rev primer | emf21H18/L |
rev primer seq. | ttcacgaaatctggtgcaagtcat |
fluor. primer | emf21H18/U_NED |
dye | NED |
fluor. Primer seq. | NED-acctcttcttttgtgacctgtcgt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 325 | 325 |
EPL-1 | 307 | 307 |
LS1151 (S.linneanum) | 307 | 307 |
LS1934 | 307 | 309 |
LS4021 (S. incanum) | 345 | 345 |
Nakate Shinkuro | 307 | 309 |
Senryo 2 | 307 | 309 |
Shironasu | 323 | 323 |
WCGR112-8 | 307 | 307 |
White Egg | 307 | 307 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 73.4 |
ALF2 | AL01 | 67.2 |
LWA2010 | LWA_01 | 61.652 |
LWAE2012 | E_01 | 64.775 |
NAF2 | NA01 | 48.2 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0121N06_SP6_328174 Chromat_file:SL_EcoRI_121_N06-SP6 SGN_GSS_ID:345000 (vector and quality trimmed) | 3e-08 |
EST Name | Species | Strain |
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