Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 51.1 |
Annotation | |
Source Name | emf11N03 |
Source Type | genomic |
Source Sequence | CTATTTAATTTTATTTGTTTAAAGAGAAATTTCTTTTATC CTAATTTCAGTATTTACTTAATTTAAAATAACTGATTGGG GTGATATAGCGAAATCATAGTTAAAGCAACTGGGAAAATT ATTTATTAGTGATAATATTGTAAAATCGTTGAAGCAAACA TCTGCCTTAAAAAGTCCATGAAATATTTTTATAGGCCCCA CACACACACACACACACACACACACACATATATATATATA TATATATATATATATTTGTAATACTTCTTTTTTTGATACA AATGTAATTACGAAAAGATATTAAAATAGTTATTTAATTT TATCTGTCCAATTTAAAGAGAAATTTGTTTTATCCTAATT TTAGTATTTACTTAACTTAAAATAACTGATTGGGGTGATA TAGCGAAATCATATTTGAAACAACAAAAAAAATTATTGCA AAATCGTTGTTGAAGCAAGCACGCATCCGCCTTAAAAAGA TTAAATTACAAAATCCATGAGATATTTTTTTTATATGTAT CACTGGTTTCGTTTTTTTTATCAAAAAGAAGGAATTTTTA ATAATTTTCAAAAAAGTTGATATTAGTTGAAATTAACTCT AAGAAATATGAGATTTGTGTAAAATGCCCATGACACTAAG CTTTGAAAGCAACTATGTATGACAGCATATGAACATATGA AAGAGTGGAAACATAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)14a(ta)13 |
---|---|
PCR product (bp) | 268 |
fwd primer | emf11N03/U |
fwd primer seq. | aaatcgttgaagcaaacatctgcc |
rev primer | emf11N03/L |
rev primer seq. | gatttcgctatatcaccccaatca |
fluor. primer | emf11N03/U_NED |
dye | NED |
fluor. Primer seq. | NED-atatcgttgaagcaaacatctgcc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 268 | 268 |
EPL-1 | 268 | 268 |
LS1151 (S.linneanum) | ||
LS1934 | 268 | 268 |
LS4021 (S. incanum) | 209 | 209 |
Nakate Shinkuro | 266 | 266 |
Senryo 2 | 268 | 268 |
Shironasu | 266 | 266 |
WCGR112-8 | 269 | 269 |
White Egg | 269 | 269 |
PI 286106 | 267 | 267 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 51.1 |
EW2009 | LG03 | 106.2 |
LWA2010 | LWA_01 | 42.995 |
LWAE2012 | E_01 | 46.924 |
N28F2 | E_01 | 113.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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