+Marker Data: emf11N03

Crop eggplant
Population AL2010
Linkage Group E_01
Marker Type SSR
Map Position 51.1
Annotation
Source Name emf11N03
Source Type genomic
Source Sequence CTATTTAATTTTATTTGTTTAAAGAGAAATTTCTTTTATC CTAATTTCAGTATTTACTTAATTTAAAATAACTGATTGGG GTGATATAGCGAAATCATAGTTAAAGCAACTGGGAAAATT ATTTATTAGTGATAATATTGTAAAATCGTTGAAGCAAACA TCTGCCTTAAAAAGTCCATGAAATATTTTTATAGGCCCCA CACACACACACACACACACACACACACATATATATATATA TATATATATATATATTTGTAATACTTCTTTTTTTGATACA AATGTAATTACGAAAAGATATTAAAATAGTTATTTAATTT TATCTGTCCAATTTAAAGAGAAATTTGTTTTATCCTAATT TTAGTATTTACTTAACTTAAAATAACTGATTGGGGTGATA TAGCGAAATCATATTTGAAACAACAAAAAAAATTATTGCA AAATCGTTGTTGAAGCAAGCACGCATCCGCCTTAAAAAGA TTAAATTACAAAATCCATGAGATATTTTTTTTATATGTAT CACTGGTTTCGTTTTTTTTATCAAAAAGAAGGAATTTTTA ATAATTTTCAAAAAAGTTGATATTAGTTGAAATTAACTCT AAGAAATATGAGATTTGTGTAAAATGCCCATGACACTAAG CTTTGAAAGCAACTATGTATGACAGCATATGAACATATGA AAGAGTGGAAACATAG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ac)14a(ta)13
PCR product (bp) 268
fwd primer emf11N03/U
fwd primer seq. aaatcgttgaagcaaacatctgcc
rev primer emf11N03/L
rev primer seq. gatttcgctatatcaccccaatca
fluor. primer emf11N03/U_NED
dye NED
fluor. Primer seq. NED-atatcgttgaagcaaacatctgcc
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 268 268
EPL-1 268 268
LS1151 (S.linneanum)
LS1934 268 268
LS4021 (S. incanum) 209 209
Nakate Shinkuro 266 266
Senryo 2 268 268
Shironasu 266 266
WCGR112-8 269 269
White Egg 269 269
PI 286106 267 267

Population Linkage Group Position
AL2010 E_01 51.1
EW2009 LG03 106.2
LWA2010 LWA_01 42.995
LWAE2012 E_01 46.924
N28F2 E_01 113.2

DB Program Definition E-Value

EST Name Species Strain