| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 51.0 |
| Annotation | |
| Source Name | emf11M07 |
| Source Type | genomic |
| Source Sequence | GCAGTTTTTTTCTCTACTTAGTCCCTTAAATTTCTTTATG TGGAATAAAATGCTATTCTCTCTCACTGAACCTACTTTGC TTAAAAATCATTAATCTTCTTCTCTACTTTTCCTCTTCCT CTCTCTCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTCT CTCTCTTTCTCTCAACAATGGCAGATGTTCACTCTCCAAT AATCTCATTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tct)3ctacttttcctcttcc(tc)6cc(tc)3tt(tc)12tt(tc)3 |
|---|---|
| PCR product (bp) | 143 |
| fwd primer | emf11M07/U |
| fwd primer seq. | ttctctctcactgaacctactttgc |
| rev primer | emf11M07/L |
| rev primer seq. | tggagagtgaacatctgccattgt |
| fluor. primer | emf11M07/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atctctctcactgaacctactttgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 150 | 150 |
| EPL-1 | 148 | 148 |
| LS1151 (S.linneanum) | 148 | 148 |
| LS1934 | 150 | 150 |
| LS4021 (S. incanum) | 120 | 120 |
| Nakate Shinkuro | 148 | 148 |
| Senryo 2 | 148 | 148 |
| Shironasu | 152 | 152 |
| WCGR112-8 | 150 | 150 |
| White Egg | 150 | 150 |
| PI 286106 | 152 | 152 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 51.0 |
| EW2009 | LG09 | 44.5 |
| LWA2010 | LWA_10 | 48.941 |
| LWAE2012 | E_10 | 53.956 |
| N28F2 | E_10 | 28.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
