Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 51.0 |
Annotation | |
Source Name | emf11M07 |
Source Type | genomic |
Source Sequence | GCAGTTTTTTTCTCTACTTAGTCCCTTAAATTTCTTTATG TGGAATAAAATGCTATTCTCTCTCACTGAACCTACTTTGC TTAAAAATCATTAATCTTCTTCTCTACTTTTCCTCTTCCT CTCTCTCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTCTCT CTCTCTTTCTCTCAACAATGGCAGATGTTCACTCTCCAAT AATCTCATTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tct)3ctacttttcctcttcc(tc)6cc(tc)3tt(tc)12tt(tc)3 |
---|---|
PCR product (bp) | 143 |
fwd primer | emf11M07/U |
fwd primer seq. | ttctctctcactgaacctactttgc |
rev primer | emf11M07/L |
rev primer seq. | tggagagtgaacatctgccattgt |
fluor. primer | emf11M07/U_PET |
dye | PET |
fluor. Primer seq. | PET-atctctctcactgaacctactttgc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 150 | 150 |
EPL-1 | 148 | 148 |
LS1151 (S.linneanum) | 148 | 148 |
LS1934 | 150 | 150 |
LS4021 (S. incanum) | 120 | 120 |
Nakate Shinkuro | 148 | 148 |
Senryo 2 | 148 | 148 |
Shironasu | 152 | 152 |
WCGR112-8 | 150 | 150 |
White Egg | 150 | 150 |
PI 286106 | 152 | 152 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 51.0 |
EW2009 | LG09 | 44.5 |
LWA2010 | LWA_10 | 48.941 |
LWAE2012 | E_10 | 53.956 |
N28F2 | E_10 | 28.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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