Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 53.7 |
Annotation | |
Source Name | emf11D23 |
Source Type | genomic |
Source Sequence | CTTCAAGTCTCCATCTCTAATCTTCATCAAGTTCATCTCC AAAGCAAGGATATGTGGGTTTCTTTCACCCATGATACCCA ACCCTCTTTACTCAAAATTACATGATTTAAAGTTGATTTA TTCATGGTCTTATCTGTTATGAAAATCACTACACATTATG TTGAGGTTCATGAAATTATGATTATTTTACCATGTTTTGT GCTATGAATCTAAGATCTATTGTAAGATTTGATAAAGTGT TTTGATATATATTGCTTGAGGGTATTACCAAGTATCTATT GAAGGTTTTTCATTGAATTTACTAGAATACTTCAAGAATC CAATAGTACCCTTAAAATGCCAAACGGAAGCTATTGCGGA TATATCATCTGTAATGCCTCTATTACTAAATAATGTAGTC ACTTTTAAAAAGGATATTCCCTCAAGATGAAGTCAACTCC TACTTCACAACTCTTTGACTTGAAATTTGTGTCGCGAGAG GAATTGAGTTTCATGAATCATAAAAAGAGGGATTTAGGGA GGGGTTTGTCTTAGTGAATTTTATTGTTTGTATGCAATTT ACATGTTAACAAGTCTTAATGATAAGTATTATGTGAGAAC AAAACAAATAAGGAATGAAAAAGGAGTCTTGGGCAGCCAT TTTTGGGCAGCCCTCTTTAAGTTGCTTTTACATAATATAT ATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGT TGCCCAAAGTTAGGCCGGTTTCAAGACTTATACTCATCTT ATAGCACCCTCATATTTGTATATTTGGTCAAAATTACGAA AAAAAAGTCACTTCCCTTGGGCAAAAATCAAGAAGCCCTA TCCTCTGGTAAGTAGATAAATTCTGTCTTGAAATTTTGCA ATGTTTAGTAATTGGGGTATATCTCTTCATATACAACTTT GTTTTTAGTGTGAATATATTTTGGAAAGCTGATTCATATA CCCACAATCTTTGTGCATATGGAAAAATCTGAACCTACTT GTATGATGTCAAAAAAGGCGTGAAACAAGTGGAAGTCCTA G |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)9(tg)13 |
---|---|
PCR product (bp) | 198 |
fwd primer | emf11D23/U |
fwd primer seq. | ggcagccctctttaagttgctttt |
rev primer | emf11D23/L |
rev primer seq. | ggatagggcttcttgatttttgcc |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 206 | 206 |
EPL-1 | 204 | 204 |
LS1151 (S.linneanum) | 193 | 193 |
LS1934 | 202 | 202 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 204 | 204 |
Senryo 2 | 204 | 204 |
Shironasu | 210 | 210 |
WCGR112-8 | 202 | 202 |
White Egg | 214 | 214 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 53.7 |
LWA2010 | LWA_09 | 55.274 |
LWAE2012 | E_09 | 44.097 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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