Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 94.2 |
Annotation | |
Source Name | emf11D18 |
Source Type | genomic |
Source Sequence | CTATGTTGACTTGGAGCGCTTTTTGTTTGGTTTTTACACA CACATATTTGATTTCAATGATTTTGAAGAATCTATATTCA AATAATTTACTATTAAAATTACATGTTTTAATCTTTGTAT TTTGAGTTACTTTCACATAATTTGAGACAGGGAGAGTGCA TTCTATGTAAGTTTTCAAATACTAATACATCATGATTTAA CTCTAGGTTATGTTGAACGATTAAGCAAAATTATAATTTT GTCCCTTATATATATATATATATATATGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTATGTATGAATGTATGTATGTATGTGAAAAAT AAGTATTGATGCAACCTTATGAACTGCTTAATTTTACAGG CCTGATCATCAAATGCAAGGGATCAGAGATGCACTATCAA GGAAAAGAAGAGAATTTATTGAGCGTGGACTAATACAAAA ATTCAAAAAAGATGAACTCAAAAAGTTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)10(tg)51 |
---|---|
PCR product (bp) | 285 |
fwd primer | emf11D18/U |
fwd primer seq. | tgagacagggagagtgcattctatg |
rev primer | emf11D18/L |
rev primer seq. | gcagttcataaggttgcatcaatac |
fluor. primer | emf11D18/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-agagacagggagagtgcattctatg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 190 | 190 |
EPL-1 | 203 | 203 |
LS1151 (S.linneanum) | 224 | 224 |
LS1934 | 192 | 198 |
LS4021 (S. incanum) | 221 | 221 |
Nakate Shinkuro | 203 | 203 |
Senryo 2 | 200 | 203 |
Shironasu | 200 | 200 |
WCGR112-8 | 225 | 225 |
White Egg | 192 | 192 |
PI 286106 | 193 | 193 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 94.2 |
ALF2 | AL09 | 114.5 |
EW2009 | LG06 | 24.8 |
LW2010 | E_09 | 87.1 |
LWA2010 | LWA_09 | 92.196 |
LWAE2012 | E_09 | 75.106 |
LWF2_2022 | E_09 | 102.6 |
N28F2 | E_09 | 84.1 |
NAF2 | NA09 | 94.2 |
DB | Program | Definition | E-Value |
---|---|---|---|
SGN_marker | BLASTN | SSR508 [ssr] | 3e-06 |
TomatoBAC_end | BLASTN | LE_HBa0054M04_SP6_12486 Chromat_file:LE_HBa_054_M04-SP6 SGN_GSS_ID:12486 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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