Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 27.8 |
Annotation | |
Source Name | emf01O07 |
Source Type | genomic |
Source Sequence | CTTAAGATCTAACTGTTGACTGCTTCTGCTGTAGTTAGCA TTGTTTGATATGATCTTTCTTCAAAAAGAGAGCTGATATA CTTTAACAGTAATGTTAGAACCCGTATTTTCGTGTGTTGG AGTAGTTACAGAAATGTGGGACCAGTGTTGCAAGTTTAGG AAAAATAATTCGGGACTTAAATGTACTCTTGAAAAGTTTG AGAACTCAAGTTGGAAAAATTGTTAAGAGGTGTGTTTATA TCTTATATATATATGCTCACATGTACACCTACAAGACCAT GGGTTAATTTCTTTCACAATAAAATATTTTAGTTAAATAC CAAAAATCTAGAACCTTAAATGGTGTTAAATTTGGATTGG AACAAGTGCACAAGTGGGGTCTTGTGGGTTATATATATAT ATATATATATGTGTGTGTGTGTGTGTGTGTTTGTGTGTGT TCCCTTATTCTTCATCAAGTAGAGCAAATTTGACACTTAG AAAAAAAAGAGCCATCTTCAAGAACAAGAGAGAACAAGTC TCGGGTTTGCTACAGTGTTTCCCACAAAAATTTTAAATTT TGATTCTCTTGCTATTTTGATGCTTTAAGTCTAGTCTATT GGTCCCCCTAAGCATCGTAGAAGCGTTGGTTGGTTGAGAA ATCACTTGGAAATTCAGTTTTGGCGATTTGAAATTCTTGA GGGGTTGACAAGGTATGTTAATTTTCTTTTGGTTTGAGTT AAATATAAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)10(tg)10tt(tg)4 |
---|---|
PCR product (bp) | 291 |
fwd primer | emf01O07/U |
fwd primer seq. | gaacaagtgcacaagtggggtct |
rev primer | emf01O07/L |
rev primer seq. | tccaagtgatttctcaaccaacca |
fluor. primer | emf01O07/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-atacaagtgcacaagtggggtct |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 294 | 294 |
EPL-1 | 294 | 294 |
LS1151 (S.linneanum) | 297 | 297 |
LS1934 | 296 | 296 |
LS4021 (S. incanum) | 273 | 273 |
Nakate Shinkuro | 294 | 294 |
Senryo 2 | 294 | 294 |
Shironasu | 294 | 294 |
WCGR112-8 | 295 | 295 |
White Egg | 300 | 300 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 27.8 |
LW2010 | E_08 | 37.8 |
LWA2010 | LWA_08 | 30.72 |
LWAE2012 | E_08 | 31.702 |
LWF2_2022 | E_08 | 37.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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