+Marker Data: emf01N04

Crop eggplant
Population AL2010
Linkage Group E_01
Marker Type SSR
Map Position 3.0
Annotation
Source Name emf01N04
Source Type genomic
Source Sequence CTAGTTCCACTCTATCAGTATCAGCCACATGCATCACTTT TCTGAGGCTCCTCCAGATAAGTCTAAGGATCCACAGTAGA TGCAGACCCTGTGAACTCAGGCGGATTAATCCTCAAAAAT TCCCAAACACTAGAAGTGTCATGGGCATCCTATGAACCCA CTCTTTCTCTTGCAATAAATGCTGTGATAGCCTGGGCTAG AGTTTGAATAGCCTAGTGAAGCTCCAAAGTGTCATGTCTT TGTTTAATCACCTTTCTCTAAGACTTCTCTAGCCTAACTC TACCTCTCCTTATATCCACTATAGCCAACCTCTCATGCCT CCTCACCACGACACCATGCCTCCTCAACGAAACATCTATG CATCTTCTCCTCACATACCTCCATCAAACTTGAAATCAAA TTCCACAACATCACTGAAGAATTCATGAAATTCCAACTAT TGAATTCAAAACAACAAAAAATCCAATAAAGATCATAAAT TTACTTAAAACCCAATTTCAATACAACACATACACACAAA AACACACTCACACACACACACACAGATACTAACAAGAAAC AGAAAAGAGGCAAAAAAAGAAAAAACCTCTCTTGGAATCG TATCTGTTCTTGGATCAGCAGGCAATTCACGAACAAACGA ATGATCCCAATTAAG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ac)3aaaa(ac)3tc(ac)7
PCR product (bp) 287
fwd primer emf01N04/U
fwd primer seq. gcctcctcaacgaaacatctatgc
rev primer emf01N04/L
rev primer seq. tgcctgctgatccaagaacagata
fluor. primer emf01N04/U_VIC
dye VIC
fluor. Primer seq. VIC-acctcctcaacgaaacatctatgc
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 286 286
EPL-1 286 286
LS1151 (S.linneanum) 308 308
LS1934 284 287
LS4021 (S. incanum) 290 290
Nakate Shinkuro 286 286
Senryo 2 287 287
Shironasu 287 287
WCGR112-8 287 287
White Egg 286 286

Population Linkage Group Position
AL2010 E_01 3.0
ALF2 AL01 2.3
LW2010 E_01 3.2
LWA2010 LWA_01 3.404
LWAE2012 E_01 4.78
LWF2_2022 E_01 195.1

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0244L24_T7_379519 Chromat_file:LE_HBa_244_L24-T7 SGN_GSS_ID:396713 (vector and quality trimmed) 6e-06
TomatoBAC_end BLASTN SL_MboI0137P05_T7_376269 Chromat_file:SL_MboI_137_P05-T7 SGN_GSS_ID:393480 (vector and quality trimmed) 6e-06

EST Name Species Strain