Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 13.7 |
Annotation | |
Source Name | emf01M12 |
Source Type | genomic |
Source Sequence | TCCTTGCTAGCAGAAGCCTTGAGGCTCAACTCTTGTCCAA AATTTGTTGAGTTACACTTTTGTGAAAGGTTGTTATATCC TAGAGGGGACAAGTCAAGGAGAATACTAGTGGATCAGTAA AAACTTTTACTGCAGTGGGCTTGAATCTCTTTAAAGGGAG CGAGATATCCGCACCTCAGACTGAAGAGTTTTTGTTCAAT TTTGACATTTATTTTTCAACTGTAATTCATTGTATTTGTG GTATATTACACCAATAATTATATATATATATATATGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTA TGTTTGCTATGATTTCACCATTAGGTGGAATCCCACAACT AAGAAAATCCCATTTCTTGAATCCCATCATTTTTTTATTG AAGATCCAAATTTGAAGCACCATTCAATTCCCTTTCCATC CAAATCTAACTGGATATTTGGATGTAATGAATGAAGGTAT CAAGATCCGTAAATGGATTGAAATCTTGTAGAAGTAAAGT CCAAGTAATATCAATATGTACCATATAAACTTTACAACAT GTCAAATTTCATTTTAATATTTTCGTCACCAAATTTACTA AATTTGTTTTATTGACTATCACCCTACCGTAATTGTCTTC CTCTACCGGGGCTTGGTACCAAAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)8(tg)21 |
---|---|
PCR product (bp) | 268 |
fwd primer | emf01M12/U |
fwd primer seq. | ccgcacctcagactgaagagtttt |
rev primer | emf01M12/L |
rev primer seq. | gaaagggaattgaatggtgcttca |
fluor. primer | emf01M12/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-acgcacctcagactgaagagtttt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 270 | 270 |
EPL-1 | 272 | 272 |
LS1151 (S.linneanum) | 247 | 247 |
LS1934 | 272 | 272 |
LS4021 (S. incanum) | 266 | 266 |
Nakate Shinkuro | 272 | 272 |
Senryo 2 | 272 | 272 |
Shironasu | 272 | 272 |
WCGR112-8 | 274 | 274 |
White Egg | 272 | 272 |
PI 286106 | 269 | 269 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 13.7 |
ALF2 | AL07 | 23.3 |
EW2009 | LG02 | 68.8 |
LW2010 | E_07 | 37.0 |
LWA2010 | LWA_07 | 37.896 |
LWAE2012 | E_07 | 31.422 |
LWF2_2022 | E_07 | 40.4 |
N28F2 | E_07_01 | 40.2 |
NAF2 | NA07 | 38.2 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_MboI0025I24_SP6_278412 Chromat_file:SL_MboI_25_I24-SP6 SGN_GSS_ID:295238 (vector and quality trimmed) | 5e-22 |
TomatoBAC_end | BLASTN | SL_EcoRI0052O21_T7_245993 Chromat_file:SL_EcoRI_052_O21-T7 SGN_GSS_ID:262819 (vector and quality trimmed) | 5e-22 |
TomatoBAC_end | BLASTN | SL_MboI0062N09_T7_164214 Chromat_file:SL_MboI_62_N09-T7 SGN_GSS_ID:181040 (vector and quality trimmed) | 2e-21 |
TomatoBAC_end | BLASTN | LE_HBa0017J21_SP6_130637 Chromat_file:LE_HBa_017_J21-SP6 SGN_GSS_ID:147468 (vector and quality trimmed) | 2e-21 |
TomatoBAC_end | BLASTN | LE_HBa0134I05_T7_60681 Chromat_file:LE_HBa_134_I05-T7 SGN_GSS_ID:60681 (vector and quality trimmed) | 2e-21 |
EST Name | Species | Strain |
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