+Marker Data: emf01K16

Crop eggplant
Population AL2010
Linkage Group E_04
Marker Type SSR
Map Position 5.4
Annotation
Source Name emf01K16
Source Type genomic
Source Sequence CTCCTCCTATAGTAGTGCATTTTTGAAGGATCTGACCTCA ACACGAAAACACTTTTGGAGAGTACATGCAACAGATTATC TGCTTACTTGTTCTCTTGGAAATGCATTCCATCTTCTTAA CATTCTGTAGCCCTTCATGTGTAACTATGATAACATATCA GTCAGACCCCCCACCCTCAGCCCCGCACACGCAAAGTTGT TTATTCCTTGACCAGATACAGAAATCACGGATGGGACTAC CAAATCTGGAGGTAACATTTGAAACACTTGTTGATGCTTT TGTGTTTTTGGACAAGAACAAGGATGGCTATGTAAGCAGG AATGAGATGGTTCACGCAATTAATGAAACTACATCTGGAG AAAGGTCTTCTGGTCGAATCGCAATGAGAAGATTTGGTAC TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG TGTGTTTGTGTTGTGTGTGTTTTATCTTATGTACAAATAT GAGAAAACTCAGGCTCTGCTTTATCTTATGTACAAATATT TCACAATTTAGGAAGATGTACCGAGTGTCTCGAATTGTGA GTGCAGCAATCTTTACGGTAGAAAGACAAGGATGATCCGA TTCGCATACTTGTTTCCAGTGGACCAGTTACTTAG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tc)9(tg)13tttgtgt(tg)4
PCR product (bp) 278
fwd primer emf01K16/U
fwd primer seq. ttttggacaagaacaaggatggct
rev primer emf01K16/L
rev primer seq. cactcacaattcgagacactcggt
fluor. primer emf01K16/U_VIC
dye VIC
fluor. Primer seq. VIC-atttggacaagaacaaggatggct
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 270 270
EPL-1 285 285
LS1151 (S.linneanum) 272 272
LS1934 280 280
LS4021 (S. incanum) 272 272
Nakate Shinkuro 272 272
Senryo 2 272 280
Shironasu 270 270
WCGR112-8 271 271
White Egg 270 270
PI 286106 270 270

Population Linkage Group Position
AL2010 E_04 5.4
ALF2 AL04 4.2
EW2009 LG05 4.4
LW2010 E_04 3.2
LWA2010 LWA_04 5.226
LWAE2012 E_04 4.535
LWF2_2022 E_04 4.1
N28F2 E_04 10.1
NAF2 NA04 5.9

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0017M12_SP6_130763 Chromat_file:LE_HBa_017_M12-SP6 SGN_GSS_ID:147594 (vector and quality trimmed) 1e-125
TomatoBAC_end BLASTN LE_HBa0136G16_SP6_69822 Chromat_file:LE_HBa_136_G16-SP6 SGN_GSS_ID:69822 (vector and quality trimmed) 1e-110

EST Name Species Strain