Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 27.5 |
Annotation | |
Source Name | eme31F04 |
Source Type | genomic |
Source Sequence | AGGCATCGAGGAAGGAAAAAAGCATTGGTGGATTAGCACA CTGGATTTTGATTTTTCGGTTGAGGTAGGTTATAGTTTGT TCTATCTAATAGAGAGACTCTTAATAGCGATTGGTAGTCA TTGAGTAAAACTGTAATATTTTCTATGCATTTAATTGTTG TGGTTTGCTTGACTGATATATTGTTGTAATTGGTCTGCAA TCCGAAGACCATGAAACCCATAATAATCTTGAACTTGATC TCTCAAAGTGATGTTTTGAATAAAGAAGGTTTGATGAAAC ATTGGTAATGAAGTGAGAAGTAATGATAAAGAACAATGAA TTATATATATTGGATCGGGTGTCACTTTCCGATACATATA TATTATAGGATCAAGTGTCACGTTCCAACACATATATATT ATAGGATTGGGTGTCACATCCGACACATATATGTTATAGG ATCGGGTGTCACATCCAGCACATATATATTATAGGATCGG GTATCACGTTTCAACACATATATATTATATGATCGGATGT CACGTCCGGTGTGCACGCGCGCGCGCGCGCGCGCACACAC ACACGCACACACACATACACACACACACACACACACACAC ACACACATATATATATATATTGATTGATTGATTAATTGGA TCGGGTGTCACGTTCTGACACGATAATAATAAAGGAAAAC ATGTTAAAAGGATTTAATATACTCAATCCCAAATAACCTA TCTCCCAAAAGAAGCATGCTGGGAGGAAGCT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (cg)9c(ac)5gc(ac)4at(ac)15a(ta)6 |
---|---|
PCR product (bp) | 282 |
fwd primer | eme31F04/U |
fwd primer seq. | ggatcaagtgtcacgttccaacac |
rev primer | eme31F04/L |
rev primer seq. | gacacccgatccaattaatcaatca |
fluor. primer | eme31F04/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-agatcaagtgtcacgttccaacac |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 278 | 278 |
EPL-1 | 276 | 276 |
LS1151 (S.linneanum) | ||
LS1934 | 281 | 281 |
LS4021 (S. incanum) | 269 | 269 |
Nakate Shinkuro | 278 | 278 |
Senryo 2 | 276 | 276 |
Shironasu | 281 | 281 |
WCGR112-8 | 276 | 276 |
White Egg | 279 | 279 |
PI 286106 | 283 | 283 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 27.5 |
LW2010 | E_08 | 37.8 |
LWA2010 | LWA_08 | 30.969 |
LWAE2012 | E_08 | 31.96 |
LWF2_2022 | E_08 | 37.5 |
N28F2 | E_08 | 45.0 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0012K21_SP6_291711 Chromat_file:SL_EcoRI_012_K21-SP6 SGN_GSS_ID:308537 (vector and quality trimmed) | 7e-09 |
TomatoBAC_end | BLASTN | SL_EcoRI0057L19_SP6_257015 Chromat_file:SL_EcoRI_057_L19-SP6 SGN_GSS_ID:273841 (vector and quality trimmed) | 3e-08 |
TomatoBAC_end | BLASTN | LE_HBa0139P14_T7_88683 Chromat_file:LE_HBa_139_P14-T7 SGN_GSS_ID:88683 (vector and quality trimmed) | 3e-08 |
TomatoBAC_end | BLASTN | LE_HBa0086C07_SP6_23532 Chromat_file:LE_HBa_086_C07-SP6 SGN_GSS_ID:23532 (vector and quality trimmed) | 3e-08 |
TomatoBAC_end | BLASTN | LE_HBa0239L21_SP6_400649 Chromat_file:LE_HBa_239_L21-SP6 SGN_GSS_ID:417843 (vector and quality trimmed) | 1e-07 |
EST Name | Species | Strain |
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