Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 53.0 |
Annotation | |
Source Name | eme30D06 |
Source Type | genomic |
Source Sequence | AACAACAATGCCGAGTGCTTTACACCTCGAAAGGTCAAAT CGATTGAAACTAAAACAGTGATAACTCATATTGAAGCATA TTACAACAATCGAAAGAGAACGAGTACAAGAAAAACATCG CAAATTGAAAGAAACTAAAACAGAACTTATTGAAAACATA CCTCGAAGAATGATTGTTCAGAGAAACTTTGAAAGATTTT GCAGAACAGAGAAAGCGGCGCTAGGGTTTCCTTCATCCTC TTGCAGAACAGAGAAACGCTGAAGCGAAAGTGGCGCTAAG GTTTTGGTATGGTGAATTATGAGGTGGAAGAGTTTATTAA AAAAAAAATTCAGTCCACAAAGATGCAAGTATAGTATATT TGGTCCCTAAACTTTTGGGTGTGTATATATATATATATAT GTGTGTGTGTGTGTGTGTGTATATATATGTGTATATATGT ATATAAATGTGTATATATATGTATATATGTGTGTATATAT ATGTATATATGTGTGTATATATAATGTCGGATTGGTTTGG TTCGGGTTGGTTTTTTTAAAATTTAAACCAAACCAACCCA AATATAGTCGGGTTTTTTTCGTCAACACCAAACCAAACCA AACCATTAGTCGGGTTTTTTTGTCGGGTTGGTTCGGTTTG CGGTTTGGTTCGGATTTCGGTTTGGTTTTGCTCACCCCTA GCAGTTACACATGGAATTGTAAAAAAGC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (gt)3a(ta)7(tg)10(ta)4tgtg(ta)3tg(ta)3aatgtg(ta)4tg(ta)3(tg)3(ta)4tg(ta)3(tg)3(ta)4 |
---|---|
PCR product (bp) | 299 |
fwd primer | eme30D06/U |
fwd primer seq. | gcgctaaggttttggtatggtgaa |
rev primer | eme30D06/L |
rev primer seq. | ccgactatatttgggttggtttgg |
fluor. primer | eme30D06/U_NED |
dye | NED |
fluor. Primer seq. | NED-acgctaaggttttggtatggtgaa |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 305 | 305 |
EPL-1 | 308 | 308 |
LS1151 (S.linneanum) | 304 | 304 |
LS1934 | 307 | 307 |
LS4021 (S. incanum) | 308 | 308 |
Nakate Shinkuro | 307 | 307 |
Senryo 2 | 307 | 307 |
Shironasu | 307 | 307 |
WCGR112-8 | 305 | 305 |
White Egg | 305 | 305 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 53.0 |
LWA2010 | LWA_05 | 45.577 |
LWAE2012 | E_05 | 47.475 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_MboI0113P11_T7_196954 Chromat_file:SL_MboI_113_P11-T7 SGN_GSS_ID:213780 (vector and quality trimmed) | 7e-06 |
EST Name | Species | Strain |
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