| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 15.5 |
| Annotation | |
| Source Name | eme12A01 |
| Source Type | genomic |
| Source Sequence | CCGGTACATGCTTGTATTATTTAACCGTTCTAAATTTACT GTCGATCTCTTCCTTTGGTTAGATCCACTATATTCAACAT GCATCTGTGAGGAGGAACATAATGATACTTAATAAATTAT ATAGATGGTGAGTGAGAGCCATTTCATTGTATGACCAATA GTTTTTCTTTTATCTCCATGTTCTTGTTTGTATTTCTGTT GCTATGAGAAGTTTGACATCTCTCTTGCTGCGTGCGCGCA CACGCGTGCGTGCGAGTGTAGAGAGAGAGAGAGAGAGAGA GAGAATCAATGCTCCTACATGGTATCTTCTTGGTAGGTTA AAAAATGCAAAGCCCATGTATTCGAATGAATCTTCCTAAA TTTAGAGATACCACGCTAAGCAAAGCTCAGATCTTGTAAC CTGTTGGTGTGTCAAAACTAACCTTAATGTGAGATGTCCA AGGTTCTGGAAGATAAAAATATTCCTACTTGTTTTATAGA TATAACTGTATTTTTATGCTTGTATCAGTAGATAAAAGGA AAGGGACAAACAAATTCCTGTTCGGTTTCCTGTCCCTGCA AACATTACTACAGATAAGGCTTACACATTCAGTTTTGTGA TATACAGGAAGAATTGCTTCCTGGTGGGCATGGTCTTATG GTTCGAGGAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)12 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme12A01/U |
| fwd primer seq. | gtttgacatctctcttgctgcgtg |
| rev primer | eme12A01/L |
| rev primer seq. | gatctgagctttgcttagcgtggt |
| fluor. primer | eme12A01/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACGTTTGACATCTCTCTTGCTGCGTG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 187 | 187 |
| EPL-1 | 187 | 187 |
| LS1151 (S.linneanum) | 188 | 188 |
| LS1934 | 183 | 183 |
| LS4021 (S. incanum) | 187 | 187 |
| Nakate Shinkuro | 187 | 187 |
| Senryo 2 | 187 | 187 |
| Shironasu | 187 | 187 |
| WCGR112-8 | 187 | 187 |
| White Egg | 187 | 187 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 15.5 |
| LW2010 | E_07 | 37.5 |
| LWA2010 | LWA_07 | 38.294 |
| LWAE2012 | E_07 | 32.276 |
| LWF2_2022 | E_07 | 39.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
