Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 54.7 |
Annotation | |
Source Name | eme11H04 |
Source Type | genomic |
Source Sequence | CCATCATAGAAACGTTATCATCGGAAGTAGTATTGTTCCA CAAATTCATGGTCGGTAAGCTGTAATCAGTCATTCCATAA ACACAAGTGGGTAAAAATGGTGGAGAGAGAGAGGGAGAGA TAAGCGATGAGGGGTGGCGGAGAGATATGAGAGAGAGCAA AATGATTTGGTTTTGGGTTCAGATTGGAATTGGAGTTTGG CTTTTATTTGAGGTGAATTTGAGCTGAATTTAGGAAAGAA AGAGGACAAAGCCTGGCGGGTTCCACGAAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)5g(ga)3 |
---|---|
PCR product (bp) | |
fwd primer | eme11H04/U |
fwd primer seq. | cacaaattcatggtcggtaagctg |
rev primer | eme11H04/L |
rev primer seq. | actccaattccaatctgaacccaa |
fluor. primer | eme11H04/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-ACACAAATTCATGGTCGGTAAGCTG |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 165 | 165 |
EPL-1 | 165 | 165 |
LS1151 (S.linneanum) | 159 | 159 |
LS1934 | 186 | 186 |
LS4021 (S. incanum) | 178 | 178 |
Nakate Shinkuro | 165 | 165 |
Senryo 2 | 165 | 165 |
Shironasu | 165 | 165 |
WCGR112-8 | 165 | 165 |
White Egg | 188 | 188 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 54.7 |
ALF2 | AL08 | 68.2 |
LW2010 | E_08 | 60.5 |
LWA2010 | LWA_08 | 56.306 |
LWAE2012 | E_08 | 56.899 |
LWF2_2022 | E_08 | 70.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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