Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 43.5 |
Annotation | |
Source Name | eme11F10 |
Source Type | genomic |
Source Sequence | AGTTCAACCACGATAAACTGATAATCACGGACAACAGTAA TCCTTAGCCTCTAACTCCATAATAATGGGAGATGTCAAAA ATCAGATTTCGACAAGCAGGCTACTCCACCACCACCACCA CCCCCACCTATGCACCCCCAAAAAAGAGAGAGAGCGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAAACTGAGAGATTTTATATTGGCAATATGGAG ATATTTTAGATGCTAAAAGACAATTTAAATGACAATACAG AAAAAGAGATGCCAGGAGTCAAAAAGAAGTTGAAATATCA AGAAGTCATCTTCTCAATCTAGCAATTTCAGAATTACACT CGGGAGAGTAATTAGAAAAACTAGAAGCAAAGGGCAGATT TTCTCAACTAAATCACACCACATTGTTGGTGCTCAGAATT GAAGATTTGCCAAGTAGAACCAACACTAACAACATCCAAT AGTATATCAAACCTTTAAGGTTGAAATTATCAAAAGATTG CGTACCAAGAAACTCTGCAGCATCATTTGGCAAATTCATT ACTACTTGAGTAATTGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)5c(ga)27aact(ga)3 |
---|---|
PCR product (bp) | |
fwd primer | eme11F10/U |
fwd primer seq. | atttcgacaagcaggctactccac |
rev primer | eme11F10/L |
rev primer seq. | tcaacttctttttgactcctggca |
fluor. primer | eme11F10/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-ATTTCGACAAGCAGGCTACTCCAC |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 225 | 225 |
EPL-1 | 227 | 227 |
LS1151 (S.linneanum) | 207 | 207 |
LS1934 | 229 | 229 |
LS4021 (S. incanum) | 215 | 215 |
Nakate Shinkuro | 229 | 229 |
Senryo 2 | 227 | 229 |
Shironasu | 227 | 227 |
WCGR112-8 | 227 | 227 |
White Egg | 229 | 229 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 43.5 |
ALF2 | AL10 | 39.3 |
LW2010 | E_10 | 41.4 |
LWA2010 | LWA_10 | 42.163 |
LWAE2012 | E_10 | 47.134 |
LWF2_2022 | E_10 | 42.0 |
N28F2 | E_10 | 18.8 |
NAF2 | NA10 | 32.9 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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