Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 0.2 |
Annotation | |
Source Name | eme11F04 |
Source Type | genomic |
Source Sequence | CCAAAAAATGATGAAAAACAAAACAACGGACTACGTTGTC AAAATAAGCGACGCAATCCATCACTTTCTTATTTTTAATT TTTTAAAAAATATTTTAATTACAAAAAGTGACGGACAACA ACTATATAACCGTCACTTATTTTTGCGGATTTTTTTGGCA AATATTATTTATTTATTTTTAATATATTTTTATAAATTTC GACATACTCAGTGATGAAGTCCGTCGCTTATATATATTTT TTAAATTAAATATTTAATTATTTTAAACGTAGGAATTATA ATAAAGAAATAATATTTTTTTAAAAAAAAATGTGACGATG GACAGAGTGTCAATGTCCACCATTTTTTAAAAATAATTCC TATTAAAATAATTTAATCTTTATAATTATATTAATAATTA ATTATTATTTTAAAAAATGCAACAAATAGAGTGGGTATCT TCTGTCGCTTTTTTTATTAATTTTTTAAATAGATTTTTTT TAAAAAATAATATTTTATTTAAAAGAAGCGACAGACTCAA GGATGCAGTCCATCACCCCTAAATTAATATGACCCCCAAA TCAAATCATTTACCCCGACATTTGCCCCTCACTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCACATTAACGCTAAAAA CCCTAACCATGCCGCCTGATTGTCGCCATCGCCATCATCA ATGTCC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)16 |
---|---|
PCR product (bp) | |
fwd primer | eme11F04/U |
fwd primer seq. | acccccaaatcaaatcatttaccc |
rev primer | eme11F04/L |
rev primer seq. | ggcatggttagggtttttagcgtt |
fluor. primer | eme11F04/U_PET |
dye | PET |
fluor. Primer seq. | PET-ACCCCCAAATCAAATCATTTACCC |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 106 | 106 |
EPL-1 | 104 | 104 |
LS1151 (S.linneanum) | 85 | 85 |
LS1934 | 108 | 108 |
LS4021 (S. incanum) | 83 | 83 |
Nakate Shinkuro | 104 | 104 |
Senryo 2 | 102 | 104 |
Shironasu | 102 | 102 |
WCGR112-8 | 98 | 98 |
White Egg | 104 | 104 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 0.2 |
ALF2 | AL02 | 1.9 |
LW2010 | E_02 | 1.5 |
LWA2010 | LWA_02 | 1.17 |
LWAE2012 | E_02 | 1.878 |
LWF2_2022 | E_02 | 12.6 |
NAF2 | NA02.1 | 1.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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