Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 42.4 |
Annotation | |
Source Name | eme08B05 |
Source Type | genomic |
Source Sequence | AACAAAATAATTGCTCAATGTTGGATTGTAATCGTCGTGT AAACCAATTTTTCGAGGAGAAATGCAGAAGACAGCCAAAG TAGAGTCTTAGAGGTTTCCCTCTTGCAAGTTATACTTGCT ATAGCAGTTTTGAGTCACATCTAACAAGTAAAAACTAGAT GGGAAATGGAGAATTTCTCCAAAAACTAACAAGTAAAAAT GTATGTTGCAACAAACTACCTGATAAAGCGACCTGGTTCA AAGCCAGGAACATCTGGTGGACCATATGGATCAAAACGGG CACCAGGTGGAACGCCCCTGTATAAAGATGAAATAGAATC AATGTTATCTTTGCAACAGAAGAGGGCGGAGAGAGAGAGA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTACGG CAGCCCTCCAGGTAAACGAGGATCCCCACCCATTCCACCA AAAAACCGAGGGTCATTAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)5a(ag)16 |
---|---|
PCR product (bp) | |
fwd primer | eme08B05/U |
fwd primer seq. | acctgataaagcgacctggttcaa |
rev primer | eme08B05/L |
rev primer seq. | gatcctcgtttacctggagggct |
fluor. primer | eme08B05/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-ACGGTGGAACGCCCCTGTATAAAGAT |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 149 | 149 |
EPL-1 | 151 | 151 |
LS1151 (S.linneanum) | 148 | 148 |
LS1934 | 151 | 151 |
LS4021 (S. incanum) | 145 | 145 |
Nakate Shinkuro | 139 | 139 |
Senryo 2 | 151 | 151 |
Shironasu | 151 | 151 |
WCGR112-8 | 151 | 151 |
White Egg | 151 | 151 |
PI 286106 | 149 | 149 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 42.4 |
LWA2010 | LWA_09 | 47.812 |
LWAE2012 | E_09 | 33.653 |
N28F2 | E_09 | 36.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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