Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 89.4 |
Annotation | |
Source Name | emd19D02C |
Source Type | genomic |
Source Sequence | aacaacatacatctagcaaatctcaGCAGCAGCAatttgc tttgcagggtgtgccggatagggtgactgatgaggtgttc atcgctatgtcaaaggcactcaactttataaaccctgatg aactttcaatgcagtgcatcttgatcgcattgaacaggtt tcttcaggttagaatcctgatcccacattgaaaacAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGggA GAGAGAGAGAGaagtaatttattctttccaggTCTCTCat attacaggaaatctctacctaaggagcttaaatgtgattg aattgtccataagtgcatcttgtttggcacccaacactac attgctgcaggaaacatttataatgccggtttcgaagatg aaacttttgaagttaccatctgtaaaagaatgtacttcgt tttggcttgttacttctggaaggcgtggcttgctccacta gatttcatttgtagggacaggtttctctaggttgagggca tatagtttgactgctggagaagttctttttatagatgtac tcttag |
Developer | NIVTS |
Document | Nunome et al. (2010) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (GA)20GG(GA)7 |
---|---|
PCR product (bp) | |
fwd primer | eme07D02/U |
fwd primer seq. | gtgactgatgaggtgttcatcgct |
rev primer | eme07D02/L |
rev primer seq. | gtgccaaacaagatgcacttatgg |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | |
polymerase |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 291 | 291 |
EPL-1 | 291 | 291 |
LS1151 (S.linneanum) | 285 | 285 |
LS1934 | 281 | 281 |
LS4021 (S. incanum) | 269 | 269 |
Nakate Shinkuro | 291 | 291 |
Senryo 2 | 291 | 291 |
Shironasu | 291 | 291 |
WCGR112-8 | 289 | 289 |
White Egg | 291 | 291 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 89.4 |
ALF2 | AL03 | 86.0 |
LW2010 | E_03 | 108.5 |
LWA2010 | LWA_03 | 110.019 |
LWAE2012 | E_03 | 119.194 |
LWF2_2022 | E_03 | 131.8 |
N28F2 | E_03 | 110.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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