Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 3.5 |
Annotation | |
Source Name | eme05G05 |
Source Type | genomic |
Source Sequence | AACATTCAAGCAACAATAAGGGGCTGCACAATCTGTTAAG GAAAGAAACGAACTGAGTTGGTGGATCTTACTTGGGAATT GACAGGAATAGAAAAACTACTATCGGCAGATTTGCCAAAA TCCGGCAAGGTCTGATGTACCCTTGGTCCAAAGGTCGTCA GGATGAGGTCGCTGGATTCTTGTTGACCGGTGGTGATAGT GCAATTAAAAAAATATAGGGAGAGAAAGGGATAAAGAAAG AGGAGCTGGGGAAATTGTCTATGGTTGCTGGTGGTTTTTG GGGGGGGGGGGAGTTGTCATCAAGGCAACGGCATGCAATG GAGAGTAGTGGAATTATTTTATCGTTGAGTGCTAGAGAAA GAGAGAACACTAGGAGAGAGAGAGAGGAGCATTAGAGTGG TAATATTTACGGCTGGAAAATCTTAAGAAATGATAAGTTG TCTTCCCAAGAAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)3a(ac)2tag(ga)6 |
---|---|
PCR product (bp) | |
fwd primer | eme05G05/U |
fwd primer seq. | aagaaagaggagctggggaaattg |
rev primer | eme05G05/L |
rev primer seq. | ccttcttgggaagacaacttatca |
fluor. primer | eme05G05/U_NED |
dye | NED |
fluor. Primer seq. | NED-ACAAGAAAGAGGAGCTGGGGAAATTG |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 228 | 228 |
EPL-1 | 228 | 228 |
LS1151 (S.linneanum) | 227 | 227 |
LS1934 | 230 | 230 |
LS4021 (S. incanum) | 234 | 234 |
Nakate Shinkuro | 229 | 229 |
Senryo 2 | 229 | 230 |
Shironasu | 230 | 230 |
WCGR112-8 | 231 | 231 |
White Egg | 227 | 227 |
PI 286106 | 227 | 227 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 3.5 |
EW2009 | LG05 | 2.8 |
LW2010 | E_04 | 2.6 |
LWA2010 | LWA_04 | 3.781 |
LWAE2012 | E_04 | 6.603 |
LWF2_2022 | E_04 | 5.5 |
N28F2 | E_04 | 7.4 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0122C02_SP6_57314 Chromat_file:LE_HBa_122_C02-SP6 SGN_GSS_ID:57314 (vector and quality trimmed) | 7e-08 |
EST Name | Species | Strain |
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