Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 4.9 |
Annotation | |
Source Name | eme03H04 |
Source Type | genomic |
Source Sequence | CCACAACGAATTGGCATTGTTGCCACGCCCGTCGTAAACT TTCCATGATAAATGATGTAGTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTTGGATTTAAAGAGAATTGTCTAA CTTTTGGGACAAGTGTCGCTAGAATGTGCTGCACAACTAT CCTACATTGGCAAACGCAGTTCTGGGGTGACACTCCTCAC CCAATTCGGTGTTCAATAATACTCCCAAGACTAAAACATG CACAATTGTCTATCAAATCAATCTTCTTTAAGACTCATAT CATCTATCACCATCATCTATCAATGAAATTATTATGAAAA AGTATGTTTACATTGTCATCAATATGTACTCAAAATATCA TTTAGGCTCAATGCTCAAATCAATCAAAACTCATTAACAT GTCAAGTGTTTCCTTAAAAAAAAACTCATGCTTTACAAAT AATCTTTGCATATCACAAAAACTCTCTCAAATCATTATTC ATACTCAACAATTATATTCATGAAACTCAGTAAAAATATG CTAAAAGAAATCATCGAGATTAATATGCTCAGAATGACTA TCAAATCTCAATTTTTCAGAGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)18 |
---|---|
PCR product (bp) | 128 |
fwd primer | eme03H04/U |
fwd primer seq. | gcccgtcgtaaactttccatgata |
rev primer | eme03H04/L |
rev primer seq. | gtgcagcacattctagcgacactt |
fluor. primer | eme03H04/U_PET |
dye | PET |
fluor. Primer seq. | PET-ACGCCCGTCGTAAACTTTCCATGATA |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 122 | 122 |
EPL-1 | 133 | 133 |
LS1151 (S.linneanum) | 154 | 154 |
LS1934 | 123 | 123 |
LS4021 (S. incanum) | 120 | 120 |
Nakate Shinkuro | 123 | 123 |
Senryo 2 | 122 | 133 |
Shironasu | 121 | 121 |
WCGR112-8 | 137 | 137 |
White Egg | 133 | 133 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 4.9 |
EW2009 | LG02 | 75.9 |
LW2010 | E_07 | 30.9 |
LWA2010 | LWA_07 | 30.107 |
LWAE2012 | E_07 | 37.706 |
LWF2_2022 | E_07 | 32.9 |
N28F2 | E_07_01 | 34.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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