Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 100.0 |
Annotation | |
Source Name | eme03F04 |
Source Type | genomic |
Source Sequence | CCTGACTTTATAAGTTTGGTTTCCCATGCAGATTATGTGA TCTTGTTGGTTTTGGTGTTGCAATTGCCACTGGTGGGCAA TTTGTGATGAATTTCCCAGAGAGAACTTACAAATCAATGT TGATACCACTAATGCAAGAAGATAAAAGATCTGGTATGAT TCCTATAATTATGCAATGCCAGTCAGATTATTTAGTGAAA AATGCAAAATATGAAACATTTGTGAATGAACATTTGATAC ATTTCCTGTAGGTGAAACTACTCGGAGAGGGTTTTATGTG TATGACGACAGACGTAAAGCGACCCCAGATCCAGAAATAA AGAAATATATTGAGAAGGCAAGAGAGATGTCTGGTGTTAC CATCGACCCCAAGGTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCT TGTGGTTGACGAATACTACTCTTGGGATTCTTTTCAGAAA TTCTACCCTGCTCTTACTCAATTGTTTTGAACTCGACACA GATGGCAAAACTCTGGGACCATGAT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)31 |
---|---|
PCR product (bp) | |
fwd primer | eme03F04/U |
fwd primer seq. | tatgacgacagacgtaaagcgacc |
rev primer | eme03F04/L |
rev primer seq. | cagagttttgccatctgtgtcgag |
fluor. primer | eme03F04/U_PET |
dye | PET |
fluor. Primer seq. | PET-ATATGACGACAGACGTAAAGCGACC |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 260 | 260 |
EPL-1 | ||
LS1151 (S.linneanum) | 215 | 215 |
LS1934 | 256 | 256 |
LS4021 (S. incanum) | 215 | 215 |
Nakate Shinkuro | 258 | 258 |
Senryo 2 | 259 | 259 |
Shironasu | 257 | 257 |
WCGR112-8 | 260 | 260 |
White Egg | 261 | 261 |
PI 286106 | 265 | 265 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 100.0 |
EW2009 | LG12 | 0.0 |
LW2010 | E_05 | 100.6 |
LWA2010 | LWA_05 | 97.51 |
LWAE2012 | E_05 | 97.044 |
LWF2_2022 | E_05 | 118.3 |
N28F2 | E_05 | 123.7 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0116G01_T7_253352 Chromat_file:LE_HBa_116_G01-T7 SGN_GSS_ID:270178 (vector and quality trimmed) | 5e-06 |
TomatoBAC_end | BLASTN | LE_HBa0179J20_SP6_125410 Chromat_file:LE_HBa_179_J20-SP6 SGN_GSS_ID:142765 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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