| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 50.5 |
| Annotation | |
| Source Name | eme03B08 |
| Source Type | genomic |
| Source Sequence | ACTCAATGACCTTGGCTAAGATCTTTCTAGTGAATTTAGG TGGTGGGATGGTGGTATTAGCACAATTGTCTTCAGTCATA TGCTTGTTTATCTGCAACTTCAGTGCCACTGCCTCATCAA CCTCAAAGGTCTCACAATCGGAGCTCTTCAAAATGGTCAT CTTTGGAGGAGAATTGTGAACTGATCAACAAACCCTAACC ATAGGCTAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGTGGACCCTAGTCATTCAAATAACACTTAACAACAAA ATAATTTGCTTTACTAAAAAGATCTTTCAAAAATTCAATC TTTGTAATGAATCTAGACTCTCCATCTCTATGATGTAGTG GTAAGGTTTGCGTACATTTTATTATCCCTAGACCCCACTT GTGAGATTCTACTAGGTATGTTATTGTTGTTTTAATGAAT CTAGAGTAGAAAACAAAATCCCTTTACATTGTATGTACGG ACATATGTGGTTTATTAATGAAATACCTTTGATCTTTGGT TTATACAAACTTATAACAAGTATCTTTCCATTTTCATTAA CATTATGATGCACTCAACACAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3a(ag)15 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | eme03B08/U |
| fwd primer seq. | ctgcctcatcaacctcaaaggtct |
| rev primer | eme03B08/L |
| rev primer seq. | aatctcacaagtggggtctaggga |
| fluor. primer | eme03B08/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atgcctcatcaacctcaaaggtct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 299 | 299 |
| EPL-1 | 299 | 299 |
| LS1151 (S.linneanum) | 316 | 316 |
| LS1934 | 299 | 299 |
| LS4021 (S. incanum) | 304 | 304 |
| Nakate Shinkuro | 299 | 299 |
| Senryo 2 | 299 | 299 |
| Shironasu | 301 | 301 |
| WCGR112-8 | 301 | 301 |
| White Egg | 301 | 301 |
| PI 286106 | 301 | 301 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_10 | 50.5 |
| EW2009 | LG09 | 41.8 |
| LWA2010 | LWA_10 | 49.249 |
| LWAE2012 | E_10 | 53.421 |
| N28F2 | E_10 | 24.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0115P17_SP6_323684 Chromat_file:SL_EcoRI_115_P17-SP6 SGN_GSS_ID:340510 (vector and quality trimmed) | 2e-15 |
| TomatoBAC_end | BLASTN | SL_EcoRI0046I11_T7_242323 Chromat_file:SL_EcoRI_046_I11-T7 SGN_GSS_ID:259149 (vector and quality trimmed) | 4e-10 |
| TomatoBAC_end | BLASTN | SL_MboI0146J08_T7_366771 Chromat_file:SL_MboI_146_J08-T7 SGN_GSS_ID:383982 (vector and quality trimmed) | 9e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0172K04_T7_104551 Chromat_file:LE_HBa_172_K04-T7 SGN_GSS_ID:104551 (vector and quality trimmed) | 1e-06 |
| EST Name | Species | Strain |
|---|
