Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 31.9 |
Annotation | |
Source Name | eme01D03 |
Source Type | genomic |
Source Sequence | ATCCTTACAGATTTTATTGAGAGATTTGAGTTAGTTTGGT GGTGTTTATGAAACAAGAATCGGTCCTCTTTGCATTGTAG GAGCAGTTGAAATATAAGCTATAAAATTAAAATGGTGGGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGAGGATGAT AGCTCAAAGAAGGGTATAGTTTCTTCTTATTTTTTGTTCT ATTGGGTTGGTGGTGGTGGTGGGTCTCTAGATACTTGAGT AATCCGTGAGATAGCGGAGAGGTGAAAAGCACAATGGTGC AGGGGTTAAGGACACGTAGAACTATGGAAAGTGGCATTCC ACACAATGGAAGTATGTAAAATTGCCCTAGTGAGCTAAAA TAATATGCATGCTGCGTGAATGCACTTCTGCAATAGTGTT CTCCTTCCGACAACTAGGCTGCATAAACCTTTGTGGAATA TCTGTAGGTAATATAATTTTTTTTTTGAATTATAAGAGCT TGAGGTGAATATCAAGCTAAGCAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)15 |
---|---|
PCR product (bp) | |
fwd primer | eme01D03/U |
fwd primer seq. | aagaatcggtcctctttgcattgt |
rev primer | eme01D03/L |
rev primer seq. | tgcttttcacctctccgctatctc |
fluor. primer | eme01D03/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-ACAAGAATCGGTCCTCTTTGCATTGT |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 223 | 223 |
EPL-1 | 223 | 223 |
LS1151 (S.linneanum) | 207 | 207 |
LS1934 | 242 | 242 |
LS4021 (S. incanum) | 211 | 211 |
Nakate Shinkuro | 221 | 221 |
Senryo 2 | 223 | 223 |
Shironasu | 242 | 242 |
WCGR112-8 | 221 | 221 |
White Egg | 242 | 242 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 31.9 |
ALF2 | AL11 | 39.8 |
EW2009 | LG01 | 84.8 |
LW2010 | E_11 | 31.9 |
LWA2010 | LWA_11 | 32.145 |
LWAE2012 | E_11 | 37.416 |
LWF2_2022 | E_11 | 36.8 |
N28F2 | E_11 | 41.1 |
NAF2 | NA11 | 32.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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