Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 48.9 |
Annotation | |
Source Name | eme01A08 |
Source Type | genomic |
Source Sequence | CCCTTCGTTGCCTTCTACTTGGAAAGGACGGATGAAGCTG ACGCAAGGACTATGCTAGAATGGGTCACGACTGCGTGTGC ACGGACCATGCAGGTAGACATGGGTCGTGGCTGTAGCCCG TGGAGGGGACGCAAATTTGGCTCACATCAAAAAATAATAA GAATTTGGCAAAGTGTTGAAGCACGGACCGTTATACGGTT CATATAACTCCATACGCATTATGGCAGCTGACCGTGGACA TGAAGCAAGAGAAATTACCATCGAAAAATGAGCAAAATTG ACCAAGTGGGAATGAATGGACATCTAGATGGGTCGTGTGA CGAACCACGACCCATGGCAAGCATCATGCAAACGGAGGAC ACAACTGGACACTGTTCCTTGACCAAGTGATGGACCATAG ACCATGTAACTGTCTGTACAAGCCCACCCGACCGTATAGG GTCCCGTACCCATGCCGATAACTTTTTATTATTTTATTTT AAAATAGCTTTTCTCACTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTTTATATATATATATGCCGTGAAAGAATGTA CTGATTGGAAAAAGAATCCTAAAATAGAAATTTGGGGTTT TAAACCTAGTCT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)16tt(ta)6 |
---|---|
PCR product (bp) | |
fwd primer | eme01A08/U |
fwd primer seq. | cactgttccttgaccaagtgatgg |
rev primer | eme01A08/L |
rev primer seq. | ccaatcagtacattctttcacggc |
fluor. primer | eme01A08/U_PET |
dye | PET |
fluor. Primer seq. | PET-ACACTGTTCCTTGACCAAGTGATGG |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 204 | 204 |
EPL-1 | 202 | 202 |
LS1151 (S.linneanum) | 217 | 217 |
LS1934 | 206 | 206 |
LS4021 (S. incanum) | 202 | 202 |
Nakate Shinkuro | 202 | 202 |
Senryo 2 | 203 | 203 |
Shironasu | 206 | 206 |
WCGR112-8 | 202 | 202 |
White Egg | 208 | 208 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 48.9 |
LW2010 | E_11 | 52.4 |
LWA2010 | LWA_11 | 49.882 |
LWAE2012 | E_11 | 55.8 |
LWF2_2022 | E_11 | 65.0 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|