+Marker Data: emd18G08

Crop eggplant
Population AL2010
Linkage Group E_09
Marker Type SSR
Map Position 52.1
Annotation
Source Name emd18G08
Source Type genomic
Source Sequence NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC CTAGGCTTGGATCGTGACAATCATATAGAGAAGGAAAGTC CTCCAGTGGGAAAATCCCACTGGTGGTGGCTACAGCCATG GAGCGGTGGCTAGGGTTTTAGGGTTTTCTTATGAGAGAGA GAGAGAGAGAGAGAGAGAGGAAAAATGTCATGCTAAAGTA TTAAATTAGACCATTCATATCATGTATACTAGAATTGATT TGGAAGTGATTATGACGCATTCTATAGATCACTTTCAGAA ATTAGAAAATTTAGCCTGAGTTCATGAACTCAAGTACAGT TTATAGATCCTTTTATGGATCATGGTTTGGCTCATGGATC AAACTTCAGAAACTCTAAACTTTATCTAACACTTACGAAC CTCATTTACAGATCGTTGAATGGACTTTGGCTCATAAACA AAACTTGTAGATCAAATTTCAGAGGTTCAAAATGCCAGTC TGATTTTCAAGAGAGGCACTTATTGTTCATAGATCAATCC GCAGATCACAAATGATCTCATAGAAGTTGCAGATGACAAT TTTCAGTCACGGTCATTTGGNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNTTCATAAACCCAAAACTTG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ag)13
PCR product (bp) 284
fwd primer emd18G08/U
fwd primer seq. ggaaagtcctccagtgggaaaatc
rev primer emd18G08/L
rev primer seq. catgagccaaaccatgatccataa
fluor. primer emd18G08/U_NED
dye NED
fluor. Primer seq. NED-agaaagtcctccagtgggaaaatc
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 284 284
EPL-1 284 284
LS1151 (S.linneanum) 279 279
LS1934 287 287
LS4021 (S. incanum) 317 317
Nakate Shinkuro 284 284
Senryo 2 284 293
Shironasu 286 286
WCGR112-8 284 284
White Egg 284 284

Population Linkage Group Position
AL2010 E_09 52.1
LW2010 E_09 57.2
LWA2010 LWA_09 57.471
LWAE2012 E_09 43.101
LWF2_2022 E_09 60.1

DB Program Definition E-Value

EST Name Species Strain