Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 44.4 |
Annotation | |
Source Name | emd17G11 |
Source Type | genomic |
Source Sequence | AACATGTCGCTTCTTATGATTCTGCAGTTTCAGAGTGGCT GTGGAAGCAGACTGTAGGAGGTATTCCCTTTCAAAGTCAT ACAGCCCAATGAATACTTAAACGCCCTCTTCCTCCCATCG TCTCCTTTGACAAAGAAAAGAAAGGTTCAATACAGAATTT GAAAACATTAAAACGAGCATCCTCAGTCTCTGCATTTAAA ATAAATTTAAGGTTGATAGTTTTTGTTGAAAAATAAGGCT TCAAATTTCTTTTAATTTTGATGAACAGTAGCCTGCAAAG CCTCATTGAACTTCAAGATGGAATATTCTGATGAATCTGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GACAGAGAGAGACGGAGAGAGAGCGTGCGGGCTTTTCATC TGCTGTTATACTGATTCATAACTTTGGTCTCTGTTGGTAG ATAAGTTCCCTCCCAGCTTGACAGTGCCACTCTCTCTAAA AGACCCACTTCGATATGGTGAAAATCCTC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)21ac(ag)4acgg(ag)4 |
---|---|
PCR product (bp) | 203 |
fwd primer | emd17G11/U |
fwd primer seq. | atgaacagtagcctgcaaagcctc |
rev primer | emd17G11/L |
rev primer seq. | tgtcaagctgggagggaacttatc |
fluor. primer | emd17G11/U_NED |
dye | NED |
fluor. Primer seq. | NED-atgaacagtagcctgcaaagcctc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 208 | 208 |
EPL-1 | 208 | 208 |
LS1151 (S.linneanum) | 169 | 169 |
LS1934 | 210 | 210 |
LS4021 (S. incanum) | 170 | 170 |
Nakate Shinkuro | 208 | 208 |
Senryo 2 | 208 | 208 |
Shironasu | 208 | 208 |
WCGR112-8 | 208 | 208 |
White Egg | 204 | 204 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 44.4 |
ALF2 | AL08 | 52.5 |
LW2010 | E_08 | 48.9 |
LWA2010 | LWA_08 | 45.086 |
LWAE2012 | E_08 | 45.605 |
LWF2_2022 | E_08 | 53.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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