+Marker Data: emd13H06

Crop eggplant
Population AL2010
Linkage Group E_04
Marker Type SSR
Map Position 61.0
Annotation
Source Name emd13H06
Source Type genomic
Source Sequence ATCTACCAAATAAACTACAAGTCACATACCAAGAAACTCT TGTGACCAGAAAGACAACAGAATACAAACTTCTCACCTTT TGATAATGAAGTTTATTACTTTAATCAACAAATGCATGAA CATATAAGAAACTTTAGTGGTTTTCCAATTACCCCCACGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGACAGAGAGAACGCTAAAAGACAATCCCTACTTTCTCT TAAATACAAGAGCAATCCATCCTAAAGAGATGTTAAGGGT GAGCAAGGAACAAAGAACAAAAGTGGAATAATCAGTATGA AATGCAGGAAACATTTAGTTTCAACTTTAACAACAACAAG AACAACAACATATCCAGTGAAATCCCACAAGTGGGGTCTG GGGAGGGTAGAATGTACGCAGACCTTACCACTACCTAAGT AGAGAGGATTAGTTTCAACTTTAACATCCACTAATAATGA GCTAAAAGAAAAAAAAGATAAGTAAACGGTCAGCTTGGCG CACTAAGCT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ag)22ac(ag)3
PCR product (bp) 284
fwd primer emd13H06/U
fwd primer seq. ttagtggttttccaattaccccca
rev primer emd13H06/L
rev primer seq. gtacattctaccctccccagaccc
fluor. primer emd13H06/U_VIC
dye VIC
fluor. Primer seq. VIC-atagtggttttccaattaccccca
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 280 280
EPL-1 280 280
LS1151 (S.linneanum) 297 297
LS1934 278 278
LS4021 (S. incanum)
Nakate Shinkuro 280 280
Senryo 2 280 280
Shironasu 278 278
WCGR112-8 284 284
White Egg 278 278

Population Linkage Group Position
AL2010 E_04 61.0
ALF2 AL04 106.0
EW2009 LG05 90.1
LW2010 E_04 87.7
LWA2010 LWA_04 91.521
LWAE2012 E_04 88.467
LWF2_2022 E_04 113.1

DB Program Definition E-Value
SGN_marker BLASTN TG151-F [RFLP] -- FORWARD SEQUENCE : Tomato-EXPIMP 2001 map, chr 2, offset 93.00, conf F(LOD3) : Tomato-EXPEN 1992 map, chr 2, offset 108.80, conf I(LOD2) 2e-07
TomatoBAC_end BLASTN SL_MboI0081L06_T7_226434 Chromat_file:SL_MboI_81_L06-T7 SGN_GSS_ID:243260 (vector and quality trimmed) 9e-20
TomatoBAC_end BLASTN LE_HBa0216N07_T7_391516 Chromat_file:LE_HBa_216_N07-T7 SGN_GSS_ID:408710 (vector and quality trimmed) 4e-19
TomatoBAC_end BLASTN LE_HBa0135I08_T7_61455 Chromat_file:LE_HBa_135_I08-T7 SGN_GSS_ID:61455 (vector and quality trimmed) 2e-17
TomatoBAC_end BLASTN SL_EcoRI0064C16_SP6_265337 Chromat_file:SL_EcoRI_064_C16-SP6 SGN_GSS_ID:282163 (vector and quality trimmed) 1e-15
TomatoBAC_end BLASTN SL_EcoRI0050M11_T7_244589 Chromat_file:SL_EcoRI_050_M11-T7 SGN_GSS_ID:261415 (vector and quality trimmed) 1e-15

EST Name Species Strain