Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 7.9 |
Annotation | |
Source Name | emd13A05 |
Source Type | genomic |
Source Sequence | GAGGTGTAAATCACCCATCCGATAGTTTGACACAGTAGCA GTGGAGAGCATGGGTATTAATATGTTAGGAGATGACCTTA AGCGAGTGAGGTCGATTCAAAGTAGATTAGTGACAACGCA TAGTCACCAAAAAAGCTATGCAGATTCGATCGTTAGTTAA TAGTTTGGTGGAAGTCTCAACCTTGAAGGGTGTTATACAA TTTGATAAGAAGGGCAAGCTCAATCTGAGGTTCATTGGTT ACTTTGGAGATTCTAGACAGAGAGAGAGAGAGAGAGAGAA AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCTTA TAGGCTTGCTTTGCCACCCAATCTAACTTCAATTCATCTT GTGTTTCATGTTTTGATGTTGCGGCATTATATTCCGGATG AGACATGTAATTTCCATGGATTCAGTTGAGTTGAGCCCTA ATTTAGAATTATGAGGAGCATTCGATTGCCATTTTGGATA GGCAAGTGAGGAAGTTGAGGACTAAGGAGATCACTTCAGT AAAGGTCTAGTGTAGCCATAGGCT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)10aaagaa(ag)14 |
---|---|
PCR product (bp) | 136 |
fwd primer | emd13A05/U |
fwd primer seq. | ggcaagctcaatctgaggttcatt |
rev primer | emd13A05/L |
rev primer seq. | agttagattgggtggcaaagcaag |
fluor. primer | emd13A05/U_NED |
dye | NED |
fluor. Primer seq. | NED-agcaagctcaatctgaggttcatt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 137 | 137 |
EPL-1 | 135 | 135 |
LS1151 (S.linneanum) | ||
LS1934 | 135 | 135 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 135 | 135 |
Senryo 2 | 135 | 135 |
Shironasu | 135 | 135 |
WCGR112-8 | 135 | 135 |
White Egg | 135 | 135 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 7.9 |
LWA2010 | LWA_04 | 42.791 |
LWAE2012 | E_04 | 42.217 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0072J22_T7_84571 Chromat_file:LE_HBa_072_J22-T7 SGN_GSS_ID:84571 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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