Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 6.7 |
Annotation | |
Source Name | emd05F08 |
Source Type | genomic |
Source Sequence | CCTACCACCCCCTGAACTAGGCAACCAAGTTACCAACCCT TTGATAGGTTACCGGAGCCTACAACCCCCGAGCTAGGCTT GGTCATCCCAAACACTATATAGAGATAATATCATATCCAT ATATATATACACACACACACACACACACACTCCTTTCATT ATCATATACATAGATTCCTTTGTCATCGTCATTCCATCAT CATTTCATCATTATATAATCATTCAACTCATAAGACATGC ATTAGATCTTCAATTCCTCGCGAATCCATAACCGGACATT TTATCAAACACTTAGAGGGTGTGTAGTGCAAGTGTAAAAC CATGCAATATAAGAGTGAAATCATACTTGTAAATTCATTG TAAAACCTTCAATATATACTTGGTAACACCCTCAAGCAAT ATATATCAAAATCCTTCTTTAAATCTTACAATAGACCTTA GATTTATAGCTCATAACATGGCAAAACAATCACAATTTCA TGAACCCCAACATAGTGTGTAGTTATTTCGATAATAGATT AGACCCATGATAAATAAACTTTAAATCATGTAATTTTGTG CAAGGAGAGCTTAGA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)5(ca)10 |
---|---|
PCR product (bp) | 265 |
fwd primer | emd05F08/U |
fwd primer seq. | aggcaaccaagttaccaacccttt |
rev primer | emd05F08/L |
rev primer seq. | taaaatgtccggttatggattcgc |
fluor. primer | emd05F08/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-ACAGGCAACCAAGTTACCAACCCTTT |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 266 | 266 |
EPL-1 | 268 | 268 |
LS1151 (S.linneanum) | 272 | 272 |
LS1934 | 266 | 266 |
LS4021 (S. incanum) | 268 | 268 |
Nakate Shinkuro | 266 | 266 |
Senryo 2 | 266 | 268 |
Shironasu | 266 | 266 |
WCGR112-8 | 264 | 264 |
White Egg | 264 | 264 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 6.7 |
EW2009 | LG10 | 30.5 |
LW2010 | E_03 | 35.0 |
LWA2010 | LWA_03 | 34.491 |
LWAE2012 | E_03 | 46.184 |
LWF2_2022 | E_03 | 33.4 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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