| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 51.1 |
| Annotation | |
| Source Name | emd05F05 |
| Source Type | genomic |
| Source Sequence | TTAAACTAGGGGGTGTCTCATTACACTACTGGACCATATA GCTTCATGATGTGATACTCACCATACTAGGATTGAGCCTA AAGGGTAGGATCTTTACACATACTTGTGACTCTCACCATG CTAGAATAGATCCTAAAGGGTGGGGTCTTTATATATATAT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTCTCACT GTGCTAGGATAGGGTCTATAAGCTGAGGAACGGGTCAACC TTGGCAAAGTAGACTCGTTAGTTATTCGTTGTAGAGGGAT CATTGAGATTTCATATAATAGTCTGCATGGTCTTATTATC GATTAGATCCTATTCCCATATATGTTTGTCTACTAGGCTA TGAAATATTTTATGATGTTTTCATCCATGATGTTAAAGAT GCATTGACTATTCATATCTTGTCCTTACTCTATTGACATG TCTATGCATATTGCTATTATTTACGATGTTCATTGATGCA TTACATGCTTATATATTTAGTATATTCGAATGTACTAATG GATACTCTTGCCTACATGAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5(tg)16 |
|---|---|
| PCR product (bp) | 227 |
| fwd primer | emd05F05/U |
| fwd primer seq. | gggggtgtctcattacactactgg |
| rev primer | emd05F05/L |
| rev primer seq. | cccgttcctcagcttatagaccct |
| fluor. primer | emd05F05/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACGGGGGTGTCTCATTACACTACTGG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 241 | 241 |
| EPL-1 | 239 | 239 |
| LS1151 (S.linneanum) | 231 | 231 |
| LS1934 | 239 | 239 |
| LS4021 (S. incanum) | 269 | 269 |
| Nakate Shinkuro | 239 | 239 |
| Senryo 2 | 237 | 239 |
| Shironasu | 239 | 239 |
| WCGR112-8 | 241 | 241 |
| White Egg | 239 | 239 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.1 |
| EW2009 | LG03 | 106.2 |
| LW2010 | E_01 | 48.3 |
| LWA2010 | LWA_01 | 42.799 |
| LWAE2012 | E_01 | 46.636 |
| LWF2_2022 | E_01 | 146.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
