+Marker Data: emd05B11

Crop eggplant
Population AL2010
Linkage Group E_11
Marker Type SSR
Map Position 15.3
Annotation
Source Name emd05B11
Source Type genomic
Source Sequence GGTGAAACTGGTTGGTAGAAAAGGTTTGGGTCCATCTGTT GATTCTATAATTGCTTCAATTAAGGCTGAGAGGGGAAGAC GCAAACCTGGTACACTTAAACCTGGTATGTCATCCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGT GTGTGTGTGTGTGTGTGTGTGTATTTCATTCTCTCTCCCT CTCTCGGTATAGGGGAAAGAGTAAGTAGCTTCATTTGTTC CTTTTTAGAAACTGTGGCACATATCAATTTAAGCCTAAAG AATTTTCCTTAAATAGGTGTCATAAAGTCAAAAGCCACCA CTCTCAAGCGAAAAATAGTAAGGTATGAGCACCCACCCTC TTTCCCTTTCCCTTTCCTCCTTTATCCGTAGTTTGTTCTT TTCTTTTCTTGTTGGGAGTGTATCTCAGCTTTCTCTGTAT CCTGTTTTGGAATTATTTCAGGAAGGCTAAAGTTGTAAGC GGAGGCAATAGAACTTCTTCTTCCCCTGCTTCTAGCAGCA GGATT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tc)20(tg)13tatttcat(tc)4c(ct)3
PCR product (bp) 287
fwd primer emd05B11/U
fwd primer seq. aattaaggctgagaggggaagacg
rev primer emd05B11/L
rev primer seq. gcttgagagtggtggcttttgact
fluor. primer emd05B11/U_VIC
dye VIC
fluor. Primer seq. VIC-ATTGCTTCAATTAAGGCTGAGAGGG
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 297 297
EPL-1 297 297
LS1151 (S.linneanum) 304 304
LS1934 297 297
LS4021 (S. incanum) 287 287
Nakate Shinkuro 297 297
Senryo 2 297 297
Shironasu 299 299
WCGR112-8 299 299
White Egg 299 299
PI 286106 283 283

Population Linkage Group Position
AL2010 E_11 15.3
ALF2 AL11 22.0
EW2009 LG01 99.6
LW2010 E_11 13.8
LWA2010 LWA_11 14.664
LWAE2012 E_11 20.414
LWF2_2022 E_11 17.1
N28F2 E_11 25.2

DB Program Definition E-Value

EST Name Species Strain