| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 48.8 |
| Annotation | |
| Source Name | emd04E10 |
| Source Type | genomic |
| Source Sequence | ATCATATGTGTAGAAGAGACCAAGCTAGAATCTCAACTAT GTTTGGGAGATGCCATTCACACCTGGACACCCTGGTGGCA AGGTACATACCCCTCACATGGTTGATGCCATTCACACCTG GACACCCTGGTGGTAATGTACATACCCCTCGCATGGTTAT CCGGCCTCCTATACCTCCCGGACCGGGCATAGTCTAATGC AACACATTATATAGCGCGCGCGCGCACGCGCACACACGCG CACACACACACACACACACACACATATATATATATCATGT ACATAAGCTCATTTCATCATCATAACATCATTCATATCAT TGCTCATGCTTTGGACCTTCAATTCCTCAAGAAATCATAA CCGAACATTTTATCAAACACTTGGGGGAGTGTAATGGGGG TAAAGGACCATGCAATTTACAGATGAAATCATGTAGGAAA ATATGTAGTAAAACCATCAATCAACACCTTACAACACCCT CAAAACATTCACATCAAAACCTCTCATCAAATCCAATATT AGATCCAAGATTTAGAGCTCAAAACATGCTAAAACAACCA TACTTTCATGAACTAAAATTACTGTGCAGTAAATTTCATA ATATACAAGACCCATATGTAAAATCAACTTTAAATCATGT AATATTAGTAAAAAGGAGGCTTAGGCACCATGGGTGAAAG GACCCAATGGTTCAACACCACATATCTTAACTTTGGAGAA GTTCTTGGTAAAGGTT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3(gc)6a(cg)2(ca)3(cg)2(ca)12(ta)5 |
|---|---|
| PCR product (bp) | 194 |
| fwd primer | emd04E10/U |
| fwd primer seq. | accgggcatagtctaatgcaacac |
| rev primer | emd04E10/L |
| rev primer seq. | ggaattgaaggtccaaagcatgag |
| fluor. primer | emd04E10/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ATGGTTATCCGGCCTCCTATACCTC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 197 | 197 |
| EPL-1 | 197 | 197 |
| LS1151 (S.linneanum) | 210 | 210 |
| LS1934 | 198 | 198 |
| LS4021 (S. incanum) | 203 | 203 |
| Nakate Shinkuro | 197 | 197 |
| Senryo 2 | 197 | 197 |
| Shironasu | 199 | 199 |
| WCGR112-8 | 199 | 199 |
| White Egg |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 48.8 |
| EW2009 | LG01 | 56.6 |
| LWA2010 | LWA_11 | 49.819 |
| LWAE2012 | E_11 | 55.786 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
