+Marker Data: emd01D08

Crop eggplant
Population AL2010
Linkage Group E_07
Marker Type SSR
Map Position 17.2
Annotation
Source Name emd01D08
Source Type genomic
Source Sequence AGTAAGCTGAAACCATAATTTGACACGCGTTCAAAAAAAT GAAATCCCTTGACTATGGTTTTTTGACTATTTTGATAACT ATACGTACTTCTATTGTCTATATTCATTTGGCTAATCTGA TGATTGTATGTACTTTCTTCTTTACATATTCGGTACGTCT TTTGTACTGACCCCCGTTCCTTCGGAGGCTGTGTTTCATG CCCGCAGGTTCTGACGCACGAGGTAAAGGACCTCCAGCTT AGGGCCTCCATCTACTTCTGACAAGCTCCCCTGCTCCGGA GCTACTTTTGGTATATTATGTTAATACTTTGATACTTCAA ATTTTATTTGTTTTGGGTATGACGGGTGCCTTGTTCCGTC GTCTGATTCTATGTGTCTGTAGTAGAGGTCTGTAGATACG TGGTGGGGTGGGTCCTATCTTTTAGTTTCCAATCTTGTAT ATATATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTTTG TGAAACCTAGCCACCTGTTGAGCATTCTGAATCTCTGTTA TGTTTATTAGGCGGCAGGACCGCAATGGTGACCTTGTCGG CCCGCATGTTTATATATTCATGTTTGCACTCTGTCTGTTG GTTCACTGTACTCTTTTGTTTCAGGTGGCTAGCCAATAAA ACAGAGGAAACTCTGCTGAAATTTTCATAAAATGAATCGT AACTTTTGGTGGAATCAGATTTGGTCATGTTGTCTGGGTG CCCCTATCGGGTACCAGTCG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)4(tg)13
PCR product (bp) 268
fwd primer emd01D08/U
fwd primer seq. ccagcttagggcctccatctactt
rev primer emd01D08/L
rev primer seq. tcaacaggtggctaggtttcacaa
fluor. primer emd01D08/U_FAM
dye FAM
fluor. Primer seq. FAM-ATCAACAGGTGGCTAGGTTTCACAA
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03
EPL-1 270 270
LS1151 (S.linneanum)
LS1934 266 266
LS4021 (S. incanum)
Nakate Shinkuro 266 266
Senryo 2 270 270
Shironasu 277 277
WCGR112-8 268 268
White Egg 290 290

Population Linkage Group Position
AL2010 E_07 17.2
EW2009 LG02 61.5
LWA2010 LWA_07 40.458
LWAE2012 E_07 34.667
N28F2 E_07_01 46.3

DB Program Definition E-Value

EST Name Species Strain