Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 85.1 |
Annotation | |
Source Name | SHT02N01W |
Source Type | EST |
Source Sequence | GGGGAAATAGCTCACAATCGTCTCTCACTCTCTTCTCACT AATGGAGCTATCACTTTCATCTCATCGTTTCATCAGCTCT TCATCATCATCATCATCATCATCATCACCATCACTACCTT CTCTATTCAATTCAAGAATTAAGGTTTCAGAAACCCCTCT CTTCTCTTTAAGAAATTATCAACAAAAGTTACAGCTTTTC ACTGGATTACACCACAAACTACCTACTTCAATGGAACCCC AAACAACGATTCCTCATGCTTTTGATAATGGGTCTTCCAT AACTTCCTCTGAAACAGGTCGAATTGGGGAAGTGAAGAGG ACTACGAAAGAGACGAATGTGCATGTGAAGATAAACTTGG ATGGAACAGGTGCTGCGGAGAATAGTTCTGGCATTCCATT TCTTGATCATATGTTGGATCAACTCGCTTCACATGGGTTG TTCGACGTGCATGTTAANNNNNATGAAATATCTATTACCG CAAAGATTCAGATTCTTTGAGCAGAGTAGTTTACTGCACT GGTATTTACCAGATATATCATGACTATTGAAGTTCTGTAG TAGAAGAAGGTGGATTGAAATACATCAAATGCTTCTCTAG CTTTTTTAAGAAATCATTTTGATGTCAACGAATGCTACAA GATGAATGGAATTGCAGGCAGCTACTTCCAGTGTTTCTGT ATTTATACTTCAAAAAGATGTTGGAGGTTTACTGGTGATG GAGGCATTTGGCTTTTGATTTGGTTATAAACCTTTTTTTT TAAGATAACCAATGATCATTTGTATGTTTTGTGACCTCTG TTCTTTTAAGTTGCCTATTACTGGGATGATATATGAATAA GCGGATGAAGTCTCTCTCCTTTGGAATGTCTGGCACTGTC TTTTCCAGCAAAACATGAGATGTAACTTGATGCTATGCCA AGTTTAAGCATTTTTTTTCCG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tca)9 |
---|---|
PCR product (bp) | 245 |
fwd primer | ecm081/U |
fwd primer seq. | ggggaaatagctcacaatcgtctc |
rev primer | ecm081/L |
rev primer seq. | tgtttggggttccattgaagtagg |
fluor. primer | ecm081/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-agggaaatagctcacaatcgtctc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 242 | 242 |
EPL-1 | 242 | 242 |
LS1151 (S.linneanum) | 249 | 249 |
LS1934 | 239 | 239 |
LS4021 (S. incanum) | 249 | 249 |
Nakate Shinkuro | 243 | 243 |
Senryo 2 | 242 | 242 |
Shironasu | 242 | 242 |
WCGR112-8 | 242 | 242 |
White Egg | 242 | 242 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 85.1 |
LW2010 | E_09 | 76.5 |
LWA2010 | LWA_09 | 82.464 |
LWAE2012 | E_09 | 66.307 |
LWF2_2022 | E_09 | 91.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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