+Marker Data: ecm081

Crop eggplant
Population AL2010
Linkage Group E_09
Marker Type SSR
Map Position 85.1
Annotation
Source Name SHT02N01W
Source Type EST
Source Sequence GGGGAAATAGCTCACAATCGTCTCTCACTCTCTTCTCACT AATGGAGCTATCACTTTCATCTCATCGTTTCATCAGCTCT TCATCATCATCATCATCATCATCATCACCATCACTACCTT CTCTATTCAATTCAAGAATTAAGGTTTCAGAAACCCCTCT CTTCTCTTTAAGAAATTATCAACAAAAGTTACAGCTTTTC ACTGGATTACACCACAAACTACCTACTTCAATGGAACCCC AAACAACGATTCCTCATGCTTTTGATAATGGGTCTTCCAT AACTTCCTCTGAAACAGGTCGAATTGGGGAAGTGAAGAGG ACTACGAAAGAGACGAATGTGCATGTGAAGATAAACTTGG ATGGAACAGGTGCTGCGGAGAATAGTTCTGGCATTCCATT TCTTGATCATATGTTGGATCAACTCGCTTCACATGGGTTG TTCGACGTGCATGTTAANNNNNATGAAATATCTATTACCG CAAAGATTCAGATTCTTTGAGCAGAGTAGTTTACTGCACT GGTATTTACCAGATATATCATGACTATTGAAGTTCTGTAG TAGAAGAAGGTGGATTGAAATACATCAAATGCTTCTCTAG CTTTTTTAAGAAATCATTTTGATGTCAACGAATGCTACAA GATGAATGGAATTGCAGGCAGCTACTTCCAGTGTTTCTGT ATTTATACTTCAAAAAGATGTTGGAGGTTTACTGGTGATG GAGGCATTTGGCTTTTGATTTGGTTATAAACCTTTTTTTT TAAGATAACCAATGATCATTTGTATGTTTTGTGACCTCTG TTCTTTTAAGTTGCCTATTACTGGGATGATATATGAATAA GCGGATGAAGTCTCTCTCCTTTGGAATGTCTGGCACTGTC TTTTCCAGCAAAACATGAGATGTAACTTGATGCTATGCCA AGTTTAAGCATTTTTTTTCCG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tca)9
PCR product (bp) 245
fwd primer ecm081/U
fwd primer seq. ggggaaatagctcacaatcgtctc
rev primer ecm081/L
rev primer seq. tgtttggggttccattgaagtagg
fluor. primer ecm081/U_FAM
dye FAM
fluor. Primer seq. FAM-agggaaatagctcacaatcgtctc
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 242 242
EPL-1 242 242
LS1151 (S.linneanum) 249 249
LS1934 239 239
LS4021 (S. incanum) 249 249
Nakate Shinkuro 243 243
Senryo 2 242 242
Shironasu 242 242
WCGR112-8 242 242
White Egg 242 242

Population Linkage Group Position
AL2010 E_09 85.1
LW2010 E_09 76.5
LWA2010 LWA_09 82.464
LWAE2012 E_09 66.307
LWF2_2022 E_09 91.1

DB Program Definition E-Value

EST Name Species Strain