Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 53.9 |
Annotation | |
Source Name | OVL01O15W |
Source Type | EST |
Source Sequence | GGGGGAACCCTACTAAATCTGTTTGATTTTCCTCAAATTT CAAACTTTTTAAGGCAATTTCAAGAACAAGATTCCTTTTT TGAGGGTTATGAGTCATCCAGTCGCCAGAAGCTTCCTGTT CACGACACTTCTTATTCAAGGCATGTCGTCAATCAGTATG TGGAGGAGGTGGAGGATGATGACAACGAAGAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAT GATGATGATGACGATGGCGATGAAAATGGTGTTCAGCGGA TAGGGAAAGATGTGTTTGAGGATGAGGATGATGATGATGA GTATGGTGATTCGCAGAGACATCAAAAGAAGAGGAAGTTA AAGAGCTTGTTATCAAGTTATGAGTTAGCACCTCGAGTAC CACCACCATCTACTACAGCTGCAACTGCTCCCAAGCCTAC ATTTGGTGGTAGGAATCCACTTTCTGACTGNNNNNCCATT CCTTTCATGTTGGGTATTTTTCATTGTTGTATTATAACTT GCATGTTAGTTTTTCCCTGGGGATGGCAATATACAAGACA ACTAAATGTGATGTAAGAATGTTTTTGAATGTAGTTTCAG CAGGCAATAATAACATAATGGGGAACCCAATTTCAGGAAA AAAAAAAAAAAAAAAAAAAAAAAAAGTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (gaa)16(gat)5 |
---|---|
PCR product (bp) | 277 |
fwd primer | ecm040/U |
fwd primer seq. | tatgtggaggaggtggaggatgat |
rev primer | ecm040/L |
rev primer seq. | tgggagcagttgcagctgtagtag |
fluor. primer | ecm040/U_PET |
dye | PET |
fluor. Primer seq. | PET-attgtggaggaggtggaggatgat |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 277 | 277 |
EPL-1 | 280 | 280 |
LS1151 (S.linneanum) | 309 | 309 |
LS1934 | 280 | 280 |
LS4021 (S. incanum) | 297 | 297 |
Nakate Shinkuro | 286 | 286 |
Senryo 2 | 280 | 286 |
Shironasu | 280 | 280 |
WCGR112-8 | 280 | 280 |
White Egg | 283 | 283 |
PI 286106 | 279 | 279 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 53.9 |
LWA2010 | LWA_05 | 46.327 |
LWAE2012 | E_05 | 48.363 |
N28F2 | E_05 | 62.6 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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