Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 62.4 |
Annotation | |
Source Name | CAL02M06C |
Source Type | EST |
Source Sequence | GTCTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNAATGTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTGCTTTGAAATGTTGGATAACATTTATTCAAT TTGTAAACACTAGTACCATCAAGTCTAAGCAGCATATTAT TATTATTATTATTATTATTATTATTATTATTATAACAGAA CAAGCACACAAAGGGCAACCAAAACATACTAAAACTTCAC TAGCAATAAATAGCAAAAATAAACAAGTTTCTCACAATCC TTCAGTGTAAGCGACACCAGTAGATTTTAACCATACTCCT CCTTGAATCAGCTGACCCACAGTGAATTTCATGGCCTCAG CTGTTGTTAAGGGTTTATGATAACCAGGCCAATTCACTCT CTTACTAACTCCAGCACCAGGCCCTTTGTTCATGTACTCA CCATAATACAACGTTTTCAATGCAAAATCACCTTGCCATT CTGACCAACCCGCTGGATCGATATGGTCCGCAATATTGGA CTGCATGTACACTGTCCGTGAATACGCTTTTCCATGGGTC GGCCCAAATACGTCTTTCACTGACCCCTTTCACTGGTGCA AGGTCGGAGCTAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tat)13aacagaacaag(ca)3 |
---|---|
PCR product (bp) | 243 |
fwd primer | ecm009/U |
fwd primer seq. | cactagtaccatcaagtctaagcagca |
rev primer | ecm009/L |
rev primer seq. | ttaacaacagctgaggccatgaaa |
fluor. primer | ecm009/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-atctagtaccatcaagtctaagcagca |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 228 | 228 |
EPL-1 | 246 | 246 |
LS1151 (S.linneanum) | 221 | 221 |
LS1934 | 246 | 246 |
LS4021 (S. incanum) | 217 | 217 |
Nakate Shinkuro | 243 | 243 |
Senryo 2 | 225 | 243 |
Shironasu | 243 | 243 |
WCGR112-8 | 225 | 225 |
White Egg | 246 | 246 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 62.4 |
ALF2 | AL02 | 66.8 |
EW2009 | LG08 | 58.2 |
LW2010 | E_02 | 46.1 |
LWA2010 | LWA_02 | 47.624 |
LWAE2012 | E_02 | 48.951 |
LWF2_2022 | E_02 | 75.5 |
NAF2 | NA02.2 | 0.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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