Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 119.6 |
Annotation | |
Source Name | ROT03H03C |
Source Type | EST |
Source Sequence | GGGGGGTGTACCCCTTACGCAATTTACACTTCCCCTCTAC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTT CTTCTGATCAACCGAACAACCAAAAATTCTCTCCTCTCTC TCCCTCTTCATCATTATCTAGGGTCATCGATTTATATATG CATACAATGCACGTTGCTTTCTCTCTCTCTGCATCCTCTG TTTATATTTAAGAGAGAGAGAGAGGTGACGCCATTGATCA CAGGAACCAACGCAGGACGGCCCAAAGTAACTTTATATTC AATTCCAACATTCATTTGCTTCGTCATTGGAAGCTCCGGA AGTGATATCTATTACTTCGGATTGAATTTTAAGATAACAA AACAGCCATGTATCCGGACCTGGTTGAAATTGCACCAAGG GAACTCACGTTCACATTTGAACCGAAGAAGC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)17 |
---|---|
PCR product (bp) | 227 |
fwd primer | ecm001/U |
fwd primer seq. | cccttacgcaatttacacttcccc |
rev primer | ecm001/L |
rev primer seq. | atcaatggcgtcacctctctctct |
fluor. primer | ecm001/U_PET |
dye | PET |
fluor. Primer seq. | PET-accttacgcaatttacacttcccc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 227 | 227 |
EPL-1 | 245 | 245 |
LS1151 (S.linneanum) | 205 | 205 |
LS1934 | 231 | 231 |
LS4021 (S. incanum) | 205 | 205 |
Nakate Shinkuro | 231 | 231 |
Senryo 2 | 231 | 245 |
Shironasu | 229 | 229 |
WCGR112-8 | 231 | 231 |
White Egg | 231 | 231 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 119.6 |
EW2009 | LG03 | 37.5 |
LWA2010 | LWA_01 | 102.482 |
LWAE2012 | E_01 | 105.237 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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