+Marker Data: EMB0059

Crop eggplant
Population AL2010
Linkage Group E_04
Marker Type SSR
Map Position 30.7
Annotation
Source Name EMB0059
Source Type genomic
Source Sequence CTACAACTTCTTGTATATCTACAAATACATATGTATACTA ACTACATATATATAATTGTTTGATATATGTACATATACAA TTCACCTCTCTCCACTCTCTACCCTATCTAGCTCGCTTCT CTCCTCCCTCTCTCGATCTTGCTCGCCTCTCTTCTTTCTC TCCCAATCTTGGTTGCGAGATATACGAATACATGCATATA TTAGGTACACATATATAATTATTTGACAATATACACATTT AATTTGACAAATACACATATACAATTCGCCTCTCTGCCCT CTCTCGCTCGCTTCTCTCCACTCTCTGTCCTCTCTCGCTC GCCTCTCTCCTCTCTCTGTCCTCTCTCACTCGCCTCTCTC CTCCATCTCTCGATCTCGTTCGCCTCTCTCCTATAATATG TAGCTACAAATTGTAGTTTTAGCAAACTATAACTATTTTT GtTTTATTATGTTTGAAGCGTTCACTCTTTTTGAAAAATC CTTTTTTTATTTTAAAAAAGAGCGCATTAGGGAAAGATTC AACTCTTAAAAGAGAAGTTTTTTGAACTAAATTATTTTTT ATCAAACTCTTTTAACAGTATTTTGAAAACAATTTTGTGA TATATCCGGGGTATACCCCTTTTTATTGGGAAATTGCAAG ACCATATATTTTTAGATTTAATTtTATCTCTATGTGTCAA GCTT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (CT)3C(CT)4
PCR product (bp) 414
fwd primer
fwd primer seq. ctagctcgcttctctcctccctct
rev primer
rev primer seq. tgaatctttccctaatgcgctctt
fluor. primer
dye FAM
fluor. Primer seq. FAM-CTAGCTCGCTTCTCTCCTCCCTCT
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2

Population Linkage Group Position
AL2010 E_04 30.7
LWA2010 LWA_04 63.576
LWAE2012 E_04 62.855

DB Program Definition E-Value

EST Name Species Strain