Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 52.1 |
Annotation | |
Source Name | EMB0016 |
Source Type | genomic |
Source Sequence | CCGTGACTGAAAATTGTCATCTGCAACTTCTATGAGATCA TTTGTGATCTGCGGATTGATCTATGAACAATAAGTGCCTC TCTTGAAAATCAGACTGGCATTTTGAACCTCTGAAATTTG ATCTACAAGTTTTGTTTATGAGCCAAAGTCCATTCAACGA TCTGTAAATGAGGTTCGTAAGTGTTAGATAAAGTTTAGAG TTTCTGAAGTTTGATCCATGAGCCAAACCATGATCCATAA AAGGATCTATAAACTGTACTTGAGTTCATGAACTCAGGCT AAATTTTCTAATTTCTGAAAGTGATCTATAGAATGCGTCA TAATCACTTCCAAATCAATTCTAGTATACATGATATGAAT GGTCTAATTTAATACTTTAGCATGACATTTTTCCTCTCCC TCTCTCTCTCTCTCTCTCTCTCATAAGAAAACCCTAAAAC CCTAGCCACCGCTCCATGGCTGTAGCCACCACCAGTGGGA TTTTCCCACTGGAGGACTTTCCTTCTCTATATGATTGTCA CGATCCAAGCCTAGGGAAGCTT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (CT)11 |
---|---|
PCR product (bp) | 234 |
fwd primer | |
fwd primer seq. | catgagccaaaccatgatccataa |
rev primer | |
rev primer seq. | ggtggctagggttttagggttttc |
fluor. primer | |
dye | FAM |
fluor. Primer seq. | FAM-CATGAGCCAAACCATGATCCATAA |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
PI 286106 | 234 | 234 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 52.1 |
LWA2010 | LWA_09 | 57.124 |
LWAE2012 | E_09 | 42.571 |
N28F2 | E_09 | 45.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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