+Marker Data: AFS149

Crop bunching_onion
Population DJF2
Linkage Group Chr4a
Marker Type SSR
Map Position 76.2
Annotation
Source Name AB499337
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2006) Breed Sci 56:321-326

motif (ac)11a(ta)6ttcacttgtaca(ta)3
PCR product (bp) 200
fwd primer AFS149-F
fwd primer seq. aaccaattgattacctctcatctgc
rev primer AFS149-R
rev primer seq. tgcggaccttccatagtctgtataa
fluor. primer AFS149-F(PET)
dye PET
fluor. Primer seq. PET-aaccaattgattacctctcatctgc
PCR condition 94C_2min->(94C_30s->60C_30s,-1C/cyc->72C_30s)x10->(94C_30s->50C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499337
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 200
product size in Iki-White 240
product size in Tender Pole 200

Line allele-1 allele-2
C1s-11s-25s-7 199 201
Cho1s-1s-2s-2s-8s 193 193
D1s-15s-10s-8 202 202
F1s-7s-17s-3s-1 201 201
J1s-14s-23s-9 204 204
K1s-5s-2s-2s-4s-5 199 199
Chiang_mai 218 220
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4a 76.2
FA 4a 62.1
KiCF2 4a 97.6
SaT03 4a 55.5

DB Program Definition E-Value

EST Name Species Strain