+Marker Data: AFRT01G11

Crop bunching_onion
Population DJF2
Linkage Group Chr6a
Marker Type SSR
Map Position 72.6
Annotation
Source Name AB499524
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (aga)4(ga)15g
PCR product (bp) 258
fwd primer AFRT01G11-U
fwd primer seq. agtgatgatttctaggggtgtggg
rev primer AFRT01G11-L
rev primer seq. gtttggaaccaccaccatacacaaaa
fluor. primer AFRT01G11-F(FAM)
dye FAM
fluor. Primer seq. FAM-agtgatgatttctaggggtgtggg
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499524
annotation
similar marker
product size in J
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 254 254
F1s-7s-17s-3s-1
J1s-14s-23s-9 260 260
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr6a 72.6

DB Program Definition E-Value

EST Name Species Strain