+Marker Data: AFRA04F12

Crop bunching_onion
Population DJF2
Linkage Group Chr1a
Marker Type SSR
Map Position 192.5
Annotation
Source Name AB499518
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)4atgcgtgcga(tg)3cga(tg)4a(tg)3
PCR product (bp) 300
fwd primer AFRA04F12-U
fwd primer seq. agaggctcaggtgtagactcggtt
rev primer AFRA04F12-L
rev primer seq. gtttgcctcacaaatcacactcaaca
fluor. primer AFRA04F12-F(PET)
dye PET
fluor. Primer seq. PET-agaggctcaggtgtagactcggtt
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499518
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 300 300
Cho1s-1s-2s-2s-8s 300 300
D1s-15s-10s-8 300 300
F1s-7s-17s-3s-1 300 300
J1s-14s-23s-9 306 306
K1s-5s-2s-2s-4s-5 300 300
Chiang_mai 269 269
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1a 192.5

DB Program Definition E-Value

EST Name Species Strain