+Marker Data: AFRA01B05

Crop bunching_onion
Population DJF2
Linkage Group Chr1a
Marker Type SSR
Map Position 101.6
Annotation
Source Name AB499511
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)5tt(tg)6
PCR product (bp) 208
fwd primer AFRA01B05-U
fwd primer seq. ataagacccaaaggaaaaagaccc
rev primer AFRA01B05-L
rev primer seq. gtttgaagtggattgaatgtagggac
fluor. primer AFRA01B05-F(FAM)
dye FAM
fluor. Primer seq. FAM-ataagacccaaaggaaaaagaccc
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499511
annotation
similar marker
product size in J 190
product size in Kaizuka-Wase 190
product size in Iki-White
product size in Tender Pole 200

Line allele-1 allele-2
C1s-11s-25s-7 212 212
Cho1s-1s-2s-2s-8s 210 210
D1s-15s-10s-8 212 212
F1s-7s-17s-3s-1 210 210
J1s-14s-23s-9 210 210
K1s-5s-2s-2s-4s-5 212 212
Chiang_mai 212 212
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1a 101.6
SaT03 1a 87.8

DB Program Definition E-Value

EST Name Species Strain