+Marker Data: AFC08G05

Crop bunching_onion
Population DJF2
Linkage Group Chr2b
Marker Type SSR
Map Position 58.7
Annotation
Source Name AB499503
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ga)3a(gaa)11aa(aga)3
PCR product (bp) 299
fwd primer AFC08G05-U
fwd primer seq. attaaaggcccattgggtatgaca
rev primer AFC08G05-L
rev primer seq. gtttgaagttcgatgccttcatgtctca
fluor. primer AFC08G05-F(VIC)
dye VIC
fluor. Primer seq. VIC-attaaaggcccattgggtatgaca
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499503
annotation
similar marker
product size in J 270
product size in Kaizuka-Wase 270
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 293 293
Cho1s-1s-2s-2s-8s 290 290
D1s-15s-10s-8 290 290
F1s-7s-17s-3s-1 290 290
J1s-14s-23s-9 293 293
K1s-5s-2s-2s-4s-5 293 293
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2b 58.7
FA 2b 9.1
KiCF2 2b 85.2
SaT03 2b 16.8

DB Program Definition E-Value

EST Name Species Strain