Crop | bunching_onion |
---|---|
Population | DJF2 |
Linkage Group | Chr3a |
Marker Type | SSR |
Map Position | 74.6 |
Annotation | |
Source Name | AB499464 |
Source Type | genomic |
Source Sequence | |
Developer | NIVTS |
Document | Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223 |
motif | (at)3gtatgtaaacttgttatt(ta)3aatatcaaaaactatgtaaaat(ta)4(tg)9tcttacatgtaaaaatatcagcgatt(ta)5 |
---|---|
PCR product (bp) | 197 |
fwd primer | AFAT11A03-U |
fwd primer seq. | acttgtcctatatgtattgaatgttgtccaaa |
rev primer | AFAT11A03-L |
rev primer seq. | gtttcggaatattttggtgtgcatgtgt |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
polymerase | Toyobo rTaq DNA polymerase |
Genebank No. | AB499464 |
annotation | |
similar marker | |
product size in J | 200 |
product size in Kaizuka-Wase | |
product size in Iki-White | 220 |
product size in Tender Pole |
Line | allele-1 | allele-2 |
---|---|---|
C1s-11s-25s-7 | ||
Cho1s-1s-2s-2s-8s | 218 | 218 |
D1s-15s-10s-8 | 210 | 210 |
F1s-7s-17s-3s-1 | ||
J1s-14s-23s-9 | 190 | 190 |
K1s-5s-2s-2s-4s-5 | 216 | 216 |
Chiang_mai | ||
Kaizuka_Wase |
Population | Linkage Group | Position |
---|---|---|
DJF2 | Chr3a | 74.6 |
FA | 3a | 82.8 |
KiCF2 | 3a | 302.2 |
SaT03 | 3a | 72.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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