+Marker Data: AFAT11A03

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 74.6
Annotation
Source Name AB499464
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (at)3gtatgtaaacttgttatt(ta)3aatatcaaaaactatgtaaaat(ta)4(tg)9tcttacatgtaaaaatatcagcgatt(ta)5
PCR product (bp) 197
fwd primer AFAT11A03-U
fwd primer seq. acttgtcctatatgtattgaatgttgtccaaa
rev primer AFAT11A03-L
rev primer seq. gtttcggaatattttggtgtgcatgtgt
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499464
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase
product size in Iki-White 220
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 218 218
D1s-15s-10s-8 210 210
F1s-7s-17s-3s-1
J1s-14s-23s-9 190 190
K1s-5s-2s-2s-4s-5 216 216
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 74.6
FA 3a 82.8
KiCF2 3a 302.2
SaT03 3a 72.2

DB Program Definition E-Value

EST Name Species Strain