+Marker Data: AFAT06D06

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 209.3
Annotation
Source Name AB499459
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (tg)8tttgtatacgtatg(ta)4tcta(tg)5tatgtatg(ta)4tgtatc(ta)4tgtacgtata(tg)5ta(tg)4
PCR product (bp) 271
fwd primer AFAT06D06-U
fwd primer seq. acaatgaaggtaaagttgggtggt
rev primer AFAT06D06-L
rev primer seq. gtttaaaaataagggttgatcttaattatcacat
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499459
annotation
similar marker
product size in J 220
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 273 273
F1s-7s-17s-3s-1 275 275
J1s-14s-23s-9 261 261
K1s-5s-2s-2s-4s-5
Chiang_mai 275 275
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 209.3
SaT03 2a 177.2

DB Program Definition E-Value

EST Name Species Strain