+Marker Data: AFAT05H05

Crop bunching_onion
Population DJF2
Linkage Group Chr4a
Marker Type SSR
Map Position 0.0
Annotation
Source Name AB499458
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)11a(ta)5t(ag)3aaatgattttttaaaatataga(ta)3
PCR product (bp) 140
fwd primer AFAT05H05-U
fwd primer seq. acaaatataaattattcattgctttctatggttag
rev primer AFAT05H05-L
rev primer seq. gtttaacttcctttgaaaactgcttttg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499458
annotation
similar marker
product size in J 150
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 117 17
Cho1s-1s-2s-2s-8s 131 131
D1s-15s-10s-8 101 117
F1s-7s-17s-3s-1 125 129
J1s-14s-23s-9
K1s-5s-2s-2s-4s-5 117 131
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4a 0.0
KiCF2 4a 103.4
SaT03 4a 42.8

DB Program Definition E-Value

EST Name Species Strain