+Marker Data: AFAT04C08

Crop bunching_onion
Population DJF2
Linkage Group Chr7b
Marker Type SSR
Map Position 55.0
Annotation
Source Name AB499449
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ag)14(tg)6tatc(tg)5tctgtgtatgtatgtatatgtatgtag(tg)5
PCR product (bp) 170
fwd primer AFAT04C08-U
fwd primer seq. aggtaccataaacctcgaaccaatg
rev primer AFAT04C08-L
rev primer seq. gtttattcaagggaatgccacatgc
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499449
annotation
similar marker
product size in J 150
product size in Kaizuka-Wase 200
product size in Iki-White 180+200
product size in Tender Pole 130

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 150 150
F1s-7s-17s-3s-1
J1s-14s-23s-9 180 180
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr7b 55.0

DB Program Definition E-Value

EST Name Species Strain