+Marker Data: AFAT00B05

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 140.1
Annotation
Source Name AB499440
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (at)3ctatgctaaccttctctaaagtacaac(ta)6tttcgtgtatc(tg)12
PCR product (bp) 200
fwd primer AFAT00B05-U
fwd primer seq. agtccactattcacggcttactca
rev primer AFAT00B05-L
rev primer seq. gtttgggtctgcctcctccttattt
fluor. primer AFAT00B05-F(NED)
dye NED
fluor. Primer seq. NED-agtccactattcacggcttactca
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499440
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 200
product size in Iki-White
product size in Tender Pole 190

Line allele-1 allele-2
C1s-11s-25s-7 202 202
Cho1s-1s-2s-2s-8s 206 206
D1s-15s-10s-8 202 204
F1s-7s-17s-3s-1 204 204
J1s-14s-23s-9 202 202
K1s-5s-2s-2s-4s-5 202 202
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 140.1
FA 2a 30.0
KiCF2 2a 117.8
SaT03 2a 126.0

DB Program Definition E-Value

EST Name Species Strain