Crop | bunching_onion |
---|---|
Population | DJF2 |
Linkage Group | Chr2a |
Marker Type | SSR |
Map Position | 140.1 |
Annotation | |
Source Name | AB499440 |
Source Type | genomic |
Source Sequence | |
Developer | NIVTS |
Document | Tsukazaki et al. (2007) Euphytica 157:83-94 |
motif | (at)3ctatgctaaccttctctaaagtacaac(ta)6tttcgtgtatc(tg)12 |
---|---|
PCR product (bp) | 200 |
fwd primer | AFAT00B05-U |
fwd primer seq. | agtccactattcacggcttactca |
rev primer | AFAT00B05-L |
rev primer seq. | gtttgggtctgcctcctccttattt |
fluor. primer | AFAT00B05-F(NED) |
dye | NED |
fluor. Primer seq. | NED-agtccactattcacggcttactca |
PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
polymerase | Toyobo rTaq DNA polymerase |
Genebank No. | AB499440 |
annotation | |
similar marker | |
product size in J | 200 |
product size in Kaizuka-Wase | 200 |
product size in Iki-White | |
product size in Tender Pole | 190 |
Line | allele-1 | allele-2 |
---|---|---|
C1s-11s-25s-7 | 202 | 202 |
Cho1s-1s-2s-2s-8s | 206 | 206 |
D1s-15s-10s-8 | 202 | 204 |
F1s-7s-17s-3s-1 | 204 | 204 |
J1s-14s-23s-9 | 202 | 202 |
K1s-5s-2s-2s-4s-5 | 202 | 202 |
Chiang_mai | - | - |
Kaizuka_Wase |
Population | Linkage Group | Position |
---|---|---|
DJF2 | Chr2a | 140.1 |
FA | 2a | 30.0 |
KiCF2 | 2a | 117.8 |
SaT03 | 2a | 126.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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